Table 2 Whole genome MSREs coverage of CpGs in human genomic DNA [4]
MSRE | Recognition sequence | Percentage coverage of CpGs in human gDNA (%) | Number of fragments (per kb) in CpG islands | Number of fragments (per kb) in non-CpG islands |
|---|---|---|---|---|
HpaII | C^CGG | 8.6 | 3.98 | 1.18 |
Hin6I | G^CGC | 6.4 | 3.98 | 0.61 |
AciI | C^CGC | 17.4 | 3.23 | 1.79 |
HpyCh4IV | A^CGT | 6.6 | 1.31 | 1.08 |
Bsu15I | AT^CGAT | 0.2 | <0.01 | 0.02 |
NarI | GG^CGCC | 0.6 | 1.08 | <0.01 |
Bsp119I | TT^CGAA | 0.1 | 0.11 | <0.01 |
Psp1406I | AA^CGTT | 0.3 | <0.01 | 0.05 |
XmiI | GT^MKAC | 0.1 | 0.19 | 0.34 |
Hin1I | GR^CGYC | 2 | 1.92 | 0.11 |