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Table 2 Seventy significantly hypermethylated genes in high-risk NB patients

From: Two independent epigenetic biomarkers predict survival in neuroblastoma

Genes

Total probes

Sig. probes

ID. Sig. probes

P values

ANKRD30A

2

1

cg18493238

0.044554738

AYTL2

2

1

cg05365670

0.035713814

C14orf162

2

1

cg14912575

0.005363655

C1orf177

2

1

cg20903926

0.012915253

CCND1

18

2

cg11802013, cg07339327

0.0341943541, 0.047611226

CD164L2

2

1

cg15166089

0.021147357

CD3Z

1

1

cg09554443

0.018393493

CDH20

1

1

cg18509435

0.047064214

CGB1

2

1

cg17164520

0.020905647

CNNM1

2

1

cg15430659

0.020905647

CPZ

2

1

cg03292388

0.022686711

CRYAA

2

1

cg19378039

0.004448711

CSH1

2

1

cg11880211

0.035724213

CSMD2

2

1

cg05382123

0.035713814

CTSZ

7

1

cg01663968

0.037116693

DUSP2

2

1

cg01148741

0.012020747

ECRG4

2

1

cg10885338

0.004398444

ENTPD3

2

1

cg17200465

0.022686711

FLJ21736

2

1

cg09407859

0.039315449

FLJ30313

2

1

cg11682508

0.035713814

FLJ39822

2

1

cg04143809

0.047611226

FUT6

2

1

cg05444024

0.03549584

GBGT1

2

1

cg01169778

0.037116693

GDPD2

2

1

cg08254263

0.034194354

GGT6

2

1

cg22628873

0.010030882

GNGT2

2

2

cg17839611, cg24456340

0.0135039944, 0.0183934926

GPR1

1

1

cg19132372

0.047064214

GPR55

2

2

cg20287234, cg13531460

0.005474794, 0.0343533092

HIST1H1A

2

1

cg14652095

0.021147357

HOXB1

2

1

cg17233506

0.020905647

HPN

2

1

cg24715735

0.022686711

JAK2

1

1

cg20394284

0.035713814

KCNQ1

23

1

cg01734338

0.034194354

KRT5

2

2

cg23645091, cg04254916

0.0067809343, 0.0072736595

KRTHB3

2

1

cg19258973

0.012020747

KRTHB5

2

1

cg06132342

0.000549806

KRTHB6

2

2

cg04123507, cg16911220

0.000926591, 0.0053636552

LAT1-3TM

1

1

cg19889584

0.013503994

LOC161931

2

1

cg17561452

0.044554738

LRRC4

2

1

cg21129531

0.013503994

LY6D

2

1

cg05800321

0.032446014

MAGEA2

2

1

cg01743008

0.034353309

MGC35169

2

1

cg16384137

0.021877651

MGMT

26

1

cg02330106

0.031115525

MKNK2

2

1

cg21030400

0.031115525

MSH4

2

1

cg22035229

0.044554738

MUC5B

2

1

cg22407504

0.030056033

NNAT

7

3

cg22510412, cg12862537, cg21588305

0.0182304654, 0.0211473571, 0.0324460138

PADI3

2

1

cg01459162

0.010896145

PAX8

2

1

cg25042226

0.007819456

PECAM1

2

1

cg03886110

0.021147357

PIP5K2A

2

1

cg26368842

0.047611226

PLA2G12B

2

1

cg21820890

0.015211786

POLR3H

1

1

cg02738086

0.044554738

PSCD4

2

1

cg05259765

0.012683212

PTGER1

2

1

cg10468702

0.022686711

PTGIR

2

1

cg11822964

0.035713814

RB1

21

1

cg07880715

0.047611226

RUNX3

19

2

cg04757093, cg25178645

0.0004487598, 0.0390263555

SCNN1A

2

1

cg18738906

0.044000585

SMPX

2

1

cg05856884

0.035713814

SPO11

2

1

cg13888886

0.001023813

TBX4

2

1

cg03866607

0.006780934

TDGF1

2

1

cg10242476

0.037116693

THEG

1

1

cg27227797

0.030056033

TP73

12

3

cg03846767, cg26208930, cg25115460

0.0038887033, 0.0324460138, 0.0470642136

TPM1

2

1

cg00520135

0.007819456

TRIP10

2

1

cg02085507

0.037116693

TSPAN32

2

1

cg00041575

0.007819456

ZNF80

2

1

cg13334054

0.012599325