Table 2 Data sets used for visualization and classifier development
Source | Samples | References | Chip type (k) | Tumor entity | Tissue type | Tissue origin |
|---|---|---|---|---|---|---|
TCGA-HNSC | 518 | NIH [27] | 450 | HNSCC | Fresh frozen | Primary tumor |
TCGA-ESCA | 95 | NIH [27] | 450 | ESCC | Fresh frozen | Primary tumor |
TCGA-LUSC | 405 | NIH [27] | 450 | LUSCC | Fresh frozen | Primary tumor |
TCGA-DLBC | 48 | NIH [27] | 450 | DLBC | Fresh frozen | Primary tumor |
DKFZ Heidelberg | 18 | Paredes et al. [28] | EPIC (850) | CSCC | FFPE | Primary tumor |
DKFZ Heidelberg | 19 | Koelsche et al. [29] | EPIC (850) | CSCC | FFPE | Primary tumor |
Charité Berlin | 49 | Leitheiser et al. [14] | EPIC (850) | HNSCC | FFPE (lymph node) | Lymph node metastasis |
Klinikum rechts der Isar Munich | 28 | This study | EPIC (850) | hnCUP | FFPE (lymph node) | Lymph node metastasis |