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Table 3 Gene ontology enrichment. Top 10 significant biological process (BP) pathways for each sleep measure

From: Objective and subjective measures of sleep initiation are differentially associated with DNA methylation in adolescents

Sleep Measure

GO

Term

Ontology1

N2

Mapped3

q-value

Bedtime (hh:mm)

PSG

GO:0032502

Developmental process

BP

6469

471

2.52E-11

GO:0048468

Cell development

BP

2034

192

3.17E-11

GO:0048856

Anatomical structure development

BP

5948

437

5.27E-11

GO:0007275

Multicellular organism development

BP

5454

402

7.37E-10

GO:0007399

Nervous system development

BP

2358

207

1.40E-09

GO:0048731

System development

BP

4887

366

1.43E-09

GO:0030182

Neuron differentiation

BP

1357

135

5.01E-09

GO:0030154

Cell differentiation

BP

4234

323

5.19E-09

GO:0009653

Anatomical structure morphogenesis

BP

2694

225

7.61E-09

GO:0048699

Generation of neurons

BP

1501

144

8.65E-09

Sleep latency (min)

Self-report

GO:0006357

Regulation of transcription by RNA polymerase II

BP

2539

86

7.0E-03

GO:0000122

Negative regulation of transcription by RNA polymerase II

BP

873

40

7.0E-03

GO:0009653

Anatomical structure morphogenesis

BP

2694

89

7.0E-03

GO:0048598

Embryonic morphogenesis

BP

569

30

7.0E-03

GO:0007399

Nervous system development

BP

2358

80

7.4E-03

GO:0022008

Neurogenesis

BP

1613

60

8.4E-03

GO:0019219

Regulation of nucleobase-containing compound metabolic process

BP

4006

119

9.9E-03

GO:0009790

Embryo development

BP

992

42

9.9E-03

GO:0032502

Developmental process

BP

6469

174

9.9E-03

GO:0006366

Transcription by RNA polymerase II

BP

2695

87

9.9E-03

ACT

GO:0050794

Regulation of cellular process

BP

11,346

374

1.3E-04

GO:0007399

Nervous system development

BP

2358

108

2.1E-04

GO:0030154

Cell differentiation

BP

4234

169

2.1E-04

GO:0048869

Cellular developmental process

BP

4315

171

2.1E-04

GO:0007275

Multicellular organism development

BP

5454

202

8.9E-04

GO:0032502

Developmental process

BP

6469

230

1.7E-03

GO:0048856

Anatomical structure development

BP

5948

214

1.8E-03

GO:0022008

Neurogenesis

BP

1613

77

1.8E-03

GO:0050789

Regulation of biological process

BP

12,294

388

1.9E-03

GO:0065007

Biological regulation

BP

13,019

406

2.1E-03

PSG

GO:0048856

Anatomical structure development

BP

5948

165

2.5E-03

GO:0044260

Cellular macromolecule metabolic process

BP

8227

212

2.5E-03

GO:0050793

Regulation of developmental process

BP

2514

84

4.6E-03

GO:0006366

Transcription by RNA polymerase II

BP

2695

87

6.5E-03

GO:0006357

Regulation of transcription by RNA polymerase II

BP

2539

83

6.5E-03

GO:0009058

Biosynthetic process

BP

6216

165

7.0E-03

GO:0009888

Tissue development

BP

2016

69

7.0E-03

GO:1,901,576

Organic substance biosynthetic process

BP

6134

163

7.0E-03

GO:0032502

Developmental process

BP

6469

170

7.0E-03

GO:0007275

Multicellular organism development

BP

5454

148

7.5E-03

  1. 1. N refers to the total number of genes that map to the gene ontology term
  2. 2. Mapped genes refers to the number of genes that map to the gene ontology term and have methylation site associations with q < 0.05