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Table 2 Top five DNA methylation loci per tissue associated with prenatal THC exposure

From: Prenatal delta-9-tetrahydrocannabinol exposure is associated with changes in rhesus macaque DNA methylation enriched for autism genes

 

Probe

Mmul_10

Nearest gene

logFC

p value

Adj. p val

Chr

Pos

Placenta

cg23018092

6

124,772,737

MEGF10

6.38

2.06E−16

4.85E−11

 

cg27346707

6

124,772,721

MEGF10

2.74

7.65E−10

5.99E−05

 

cg05494467

6

138,890,510

PCDHGA8

− 3.81

5.40E−10

5.99E−05

 

cg20825437

13

63,151,971

PRKCE

− 1.30

1.45E−09

8.54E−05

 

cg03721362

6

124,772,671

MEGF10

3.47

5.12E−09

0.0002

Cerebellum

cg00617180

4

124,660,978

SUPT3H

− 1.75

4.49E−10

0.000105

 

cg19948549

5

8,503,869

NSG1

− 1.39

9.65E−10

0.000113

 

cg17478992

2

151,164,369

SLC12A8

0.78

4.69E−07

0.036697

 

cg13699963

16

69,873,069

SDK2

2.14

1.86E−06

0.08718

 

cg11031701

16

35,959,387

TBX2

1.44

1.74E−06

0.08718

Prefrontal Cortex

cg00617180

4

124,660,978

SUPT3H

− 2.04

1.87E−12

4.38E−07

 

cg01898225

7

78,635,212

LRRC28

0.63

4.18E−07

0.049039

 

cg02616023

1

88,639,226

NOS1AP

− 1.40

2.05E−05

0.999987

 

cg14964115

9

115,397,494

FAM160B1

1.02

2.48E−05

0.999987

 

cg13915892

13

1,072,439

LMAN2L

0.60

3.62E−05

0.999987

Heart

cg22754569

8

59,305,442

NSMAF

1.61

4.36E−08

0.010244

 

cg19504702

6

151,889,356

HAND1

− 1.43

3.34E−07

0.039244

 

cg00617180

4

124,660,978

SUPT3H

− 1.23

1.10E−06

0.085922

 

cg03396151

7

13,532,030

MEIS2

0.95

6.03E−06

0.353767

 

cg06933370

7

13,532,249

MEIS2

1.21

9.42E−06

0.442549

Lung

cg00617180

4

124,660,978

SUPT3H

− 1.48

7.89E−09

0.001852

 

cg17760405

4

72,836,058

SIM1

2.08

2.11E−05

0.999998

 

cg10762132

13

15,816,921

SLC20A1

− 0.94

4.46E−05

0.999998

 

cg23616524

3

156,111,969

UBE2H

0.91

6.44E−05

0.999998

 

cg11126485

14

12,810,784

TMEM138

1.57

7.09E−05

0.999998

  1. Tested using limma with CpG-wise statistical models with factorial design of group and tissue, accounting for within subject correlation
  2. Bold text indicates FDR adjusted p-value < 0.05