Skip to main content

Table 1 Summary of the main characteristics of the evaluated studies

From: DNA methylation impact on Fabry disease

References

Samples

Type of sample

Method

Main findings

Redonnet-Vernhet et al. [15]

2 FD women

Peripheral blood leukocytes; Fibroblasts

HUMARA assay

Unbalanced XCI in monozygotic twins’ fibroblasts in opposite direction. This is the first documented case of female twins discordant for FD

Maier et al. [19]

28 FD women

Blood

HUMARA assay

Fabry heterozygous females showed a random X inactivation and no significant correlation was found between X inactivation patterns and clinical phenotype

Elstein et al. [20]

77 FD women

Peripheral blood leukocytes

HUMARA assay

XCI did not correlate with signs and symptoms of classic Fabry disease

Hübner et al. [51]

9 FD patients

Peripheral blood leukocytes

CALCR Methylation-specific PCR- High-resolution melting

CALCR sequencing

A specific CpG of autosomal CALCR gene is differentially methylated in ERT treated and non-ERT-treated FD patients indicating that this CpG could be an epigenetic biomarker of FD

Echevarria et al. [18]

56 FD women

Peripheral blood; Mouth epithelial cells; skin biopsy; Urine

HUMARA assay

XCI significantly impacted the phenotype and natural history of FD in females, supporting the correlation between XCI and clinical phenotype

Hossain et al. [44]

4 FD women

Peripheral blood; spinal fluid

GLA Methylation-sensitive restriction enzymes analyses

GLA Bisulfite Sanger sequencing

Allele-specific GLA methylation correlated with the severity of FD phenotype

Juchniewicz et al. [21]

12 FD women

Saliva

HUMARA assay

XCI pattern did not correlate with Fabry disease severity scores

Hossain et al. [46]

36 FD women

Peripheral blood; skin fibroblasts

GLA Methylation-sensitive restriction enzymes analyses

GLA Bisulfite Sanger sequencing

Methylation of the GLA non-mutated allele was proportionally correlated with the clinical severity score (FASTEX score)

Yanagisawa et al. [45]

4 FD women

Fibroblast from Skin tissue

Allele-specific GLA expression (RT-PCR)

mRNA expression level of the GLA mutant allele correlated with disease severity

De Riso et al. [55]

3 FD women

Peripheral blood

High coverage-amplicon bisulfite sequencing (HC-ABS) versus HUMARA

Substantial concordance in direction and entity of the methylation imbalance between AR and GLA genes. Clearly distinct allele-specific epiallele profiles were obtained by epiallele distribution analysis

Rossanti et al. [56]

9 FD women

Blood leukocytes; Urine sediments

HUMARA assay

GLA Ultra-deep targeted RNA Sequencing

Skewed XCI explained the severity of FD in only limited number of female cases