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Table 1 Demographic and clinical characteristics of the samples used in the EPIC array assay

From: Epigenome-wide association study of Alzheimer’s disease replicates 22 differentially methylated positions and 30 differentially methylated regions

Brain region

STG

IFG

Clinical diagnosis

Cognitively normal

Alzheimer’s disease

p**

Cognitively normal

Alzheimer’s Disease

p**

Sample size

N = 60

N = 67

N = 57

N = 60

Age at death (year), mean (SD)

80.65 (6.94)

81.00 (7.09)

0.717

81.00 (6.63)

81.13 (6.40)

0.967

Sex, male n (%)

37 (61.7)

39 (58.2)

0.692

36 (63.2)

35 (58.3)

0.593

PMI (hour), Mean (SD)

3.24 (2.02)

3.06 (1.60)

0.837

3.25 (2.05)

3.15 (1.69)

0.846

Estimated NeuN+ (%) Mean (SD)

30.3 (13.1)

29.6 (11.3)

0.504

24.5 (12.3)

28.1 (9.9)

0.159

Estimated NeuN (%), Mean (SD)

68.6 (14.1)

69.3 (12.7)

0.570

69.0 (15.4)

64.1 (12.0)

0.095

NIA-Reagan criteria [72], n

 Criteria not met

59

  

56

  

 Not AD

1

  

1

  

 Low

 

2

  

2

 

 Intermediate

 

16

  

17

 

 High

 

49

  

41

 

Semiquantitative measure of neuritic plaques CERAD score [73], n

 Criteria not met

6

  

6

  

 Not AD

33

  

31

  

 Possible AD

21

  

20

  

 Probable AD

 

8

  

8

 

 Definite AD

 

59

  

52

 

Braak stage, n

 I

15

  

12

  

 II

14

2

 

14

2

 

 III

20

4

 

21

4

 

 IV

11

12

 

10

13

 

 V

 

28

  

21

 

 VI

 

21

  

20

 

APOE genotype, n*

 ε2/ε2

1

0

 

2

0

 

 ε2/ε3

10

3

 

10

1

 

 ε3/ε3

32

26

 

30

26

 

 ε3/ε4

16

33

 

15

27

 

 ε2/ε4

0

1

 

0

1

 

 ε4/ε4

1

3

 

0

4

 
  1. SD: standard deviation; STG: superior temporal gyrus (BA22); IFG: inferior frontal gyrus (BA44); PMI: postmortem interval; CERAD [73]: Consortium to Establish a Registry for Alzheimer’s Disease
  2. *1 STG and 1 IFG sample, respectively, has missing APOE genotype
  3. **Wilcoxon rank-sum test for continuous variables; Chi-squared test for categorical variables