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Table 1 Annotation of differentially methylated probes in the blue group

From: Epigenetic stratification of head and neck cancer survivors reveals differences in lycopene levels, alcohol consumption, and methylation of immune regulatory genes

Probe ID

Gene

Name

Primary function

Relation to island

CpG location

Regulatory feature

Methylation

cg02010442a

ATG4A

Autophagy related 4A cysteine peptidase

Autophagy

Island

1st Exon, 5’UTR

Promoter

Hypomethylated

cg02010442a

PSMD10

Proteasome 26S Subunit, Non-ATPase 10

Protein degradation

Island

TSS200

Promoter

Hypomethylated

cg03219922

N/A

N/A

N/A

Shore

N/A

N/A

Hypermethylated

cg04621904

FAM47C

Family with sequence similarity 47 member C

Unknown

Shore

1st Exon

None

Hypermethylated

cg06081716

SENP7

SUMO/Sentrin specific peptidase 7

SUMOylation

Shore

TSS1500

Promoter

Hypermethylated

cg07917502b

PREPL

Prolyl endopeptidase like

Proteolysis

Island

TSS200

Promoter

Hypermethylated

cg07917502b

CAMKMT

Calmodulin-lysine N-methyltransferase

Calcium signaling

Island

TSS200

Promoter

Hypermethylated

cg09130556

CYP1B1

Cytochrome P450 family 1 subfamily B member 1

Cytochrome p450

Island

TSS1500

Enhancer

Hypermethylated

cg11585357

N/A

N/A

N/A

Sea

N/A

Enhancer

Hypomethylated

cg11754259

ZBTB44

Zinc finger and BTB domain containing 44

Transcription

Island

1st Exon, 5’UTR

None

Hypermethylated

cg11873147

C1QL2

Complement C1q like 2

Complement protein

Island

Gene Body

None

Hypermethylated

cg14137558

UTP14A

UTP14A, small subunit processome component

Ribosomal protein

Island

TSS200

Promoter

Hypomethylated

cg15682807

ITM2A

Integral membrane protein 2A

Membrane Protein

Sea

1st Exon

None

Hypomethylated

cg15842967

KDM2A

Lysine demethylase 2A

Transcription, histone modification

Sea

Gene Body

Promoter

Hypermethylated

cg17145281

INTS5

Integrator Complex Subunit 5

Integrator complex with RNA Pol II

Shore

Gene Body

Promoter

Hypermethylated

cg17716100

FOXO4

Forkhead box O4

Transcription factor, lipid metabolism

Island

TSS1500

Promoter

Hypomethylated

cg21888438

MID1IP1

MID1 interacting protein 1

Lipid metabolism

Island

Gene Body

None

Hypomethylated

cg24890023

XPO1

Exportin 1

Nuclear export

Shore

5’UTR

None

Hypermethylated

cg26708638

ZNF444

Zinc finger protein 444

Transcription

Island

TSS200

Promoter

Hypomethylated

cg27360006

ZNF41

Zinc finger protein 41

Transcription

Sea

Gene Body

None

Hypermethylated

cg27609596

PTCHD1

Patched domain containing 1

Membrane protein, autism

Island

TSS1500

None

Hypomethylated

  1. 5’UTR: 5’ untranslated region, TSS200: within 200 bp of the transcription start site, TSS1500: within 1500 bp of the transcription start site. acg02010442 and bcg07917502 were each associated with two different genes.