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Table 1 Altered CGI flanking region in pilocytic astrocytoma

From: Clustered protocadherins methylation alterations in cancer

UCSC CGI UCSC CGI name CTCF binding site Relation to UCSC CGI Δβ value (PA-control) Genes within region Gene promoter-associated N-shelf
chr5:140871064-140872335 CpG 122 chr5:140870147-140872480 N-shelf − 0.285 PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7, PCDHGC3, PCDHGC4, PCDHGC5 PCDHGC5
chr5:140871308-140873492
  1. Note: CGI CpG island, PA pilocytic astrocytoma. CpG 122 corresponds to UCSC CGI name