Skip to main content

Table 3 Average methylation of HIF3A.1 and HIF3A.2 by genotype for each of the 14 tag SNPs considered in this analysis

From: Early-life determinants of hypoxia-inducible factor 3A geneĀ (HIF3A) methylation: a birth cohort study

SNP

HIF3A.1 methylation (nā€‰=ā€‰410)

HIF3A.2 methylation (nā€‰=ā€‰595)

rs62111812

Mean (SD)

n

p

Mean (SD)

n

p

ā€ƒG/G

70.02 (4.59)

313

0.22

37.95 (9.96)

438

0.1

ā€ƒG/A

70.93 (4.74)

89

Ā 

39.93 (8.74)

144

Ā 

ā€ƒA/A

71.19 (1.71)

8

Ā 

39.47 (10.37)

13

Ā 

rs112087991

ā€ƒT/T

70.39 (4.47)

359

0.22

39.46 (9.44)

522

<ā€‰0.0001

ā€ƒT/C

69.18 (5.38)

49

Ā 

31.54 (8.67)

70

Ā 

ā€ƒC/C

69.57 (0.61)

2

Ā 

27.17 (8.30)

3

Ā 

rs8102595

ā€ƒA/A

69.97 (4.60)

331

0.04

38.63 (9.83)

477

0.7

ā€ƒA/G

71.37 (4.46)

76

Ā 

37.79 (9.28)

115

Ā 

ā€ƒG/G

72.07 (2.20)

3

Ā 

37.56 (9.56)

3

Ā 

rs3826795

ā€ƒC/C

70.65 (4.18)

250

0.07

40.42 (9.14)

364

<ā€‰0.0001

ā€ƒC/T

69.68 (5.23)

142

Ā 

35.76 (9.45)

196

Ā 

ā€ƒT/T

69.03 (4.16)

18

Ā 

33.28 (11.52)

35

Ā 

rs3810298

ā€ƒC/C

70.42 (4.27)

337

0.26

40.32 (9.02)

476

<ā€‰0.0001

ā€ƒC/T

69.44 (5.95)

67

Ā 

31.84 (8.63)

109

Ā 

ā€ƒT/T

69.44 (4.36)

6

Ā 

22.26 (5.88)

10

Ā 

rs140454328

ā€ƒT/T

70.26 (4.61)

398

0.71

38.49 (9.72)

563

0.87

ā€ƒT/C

69.75 (4.01)

12

Ā 

38.08 (9.90)

31

Ā 

ā€ƒC/C

ā€“

0

Ā 

33.83 (0)

1

Ā 

rs36063219

ā€ƒC/C

70.23 (4.63)

393

0.78

38.41 (9.76)

576

0.46

ā€ƒC/T

70.55 (3.80)

17

Ā 

40.08 (8.39)

19

Ā 

ā€ƒT/T

ā€“

0

Ā 

ā€“

0

Ā 

rs3752207

ā€ƒC/C

70.23 (4.43)

357

0.21

38.31 (9.54)

516

0.29

ā€ƒC/A

70.66 (4.95)

48

Ā 

39.06 (11.02)

72

Ā 

ā€ƒA/A

66.83 (10.11)

5

Ā 

43.75 (7.81)

7

Ā 

rs4803929

ā€ƒC/C

70.13 (4.64)

355

0.04

38.6 (9.78)

510

0.29

ā€ƒC/T

70.7 (4.01)

53

Ā 

37.41 (9.25)

83

Ā 

ā€ƒT/T

77.88 (4.77)

2

Ā 

46.49 (8.69)

2

Ā 

rs9304657

ā€ƒT/T

70.34 (4.00)

181

0.75

38.31 (10.18)

288

0.92

ā€ƒT/C

70.27 (5.00)

178

Ā 

38.58 (9.48)

237

Ā 

ā€ƒC/C

69.80 (5.12)

51

Ā 

38.72 (8.58)

70

Ā 

rs76789866

ā€ƒT/T

70.26 (4.58)

385

0.82

38.83 (9.61)

546

0.01

ā€ƒT/C

70.04 (4.79)

25

Ā 

34.29 (9.85)

47

Ā 

ā€ƒC/C

ā€“

0

Ā 

37.43 (17.94)

2

Ā 

rs75952656

ā€ƒT/T

70.28 (4.67)

382

0.54

38.32 (9.70)

558

0.15

ā€ƒT/A

69.73 (3.29)

28

Ā 

40.71 (9.81)

37

Ā 

ā€ƒA/A

ā€“

0

Ā 

ā€“

0

Ā 

rs917946

ā€ƒA/A

70.25 (4.58)

328

0.96

38.07 (9.51)

477

0.05

ā€ƒA/G

70.23 (4.72)

79

Ā 

39.74 (10.47)

111

Ā 

ā€ƒG/G

69.44 (2.17)

3

Ā 

45.28 (7.40)

7

Ā 

rs12459580

ā€ƒG/G

70.08 (4.19)

119

0.65

38.71 (8.36)

168

0.93

ā€ƒG/C

70.44 (4.74)

212

Ā 

38.36 (9.89)

295

Ā 

ā€ƒC/C

69.95 (4.77)

79

Ā 

38.39 (10.91)

132

Ā 
  1. p value is from one-way ANOVA. SD standard deviation