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Table 3 Top 30 most significant cis-mQTLs in blood

From: Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases

CHR

SNP

BP

A1

BETA

SE

P value

DNAm probe Site ID

Probe start (hg19)

Closest TSS gene name

3

rs6783741

43,455,926

T

0.448

0.001743

2.21E-67

cg11035303

43,465,453

SNRK

6

6:29699301:TGAGAGA :TGAGA

29,699,301

TGAGAGA

0.4433

0.002662

1.16E-59

cg27230769

29,705,998

HLA-F-AS1

8

rs12675160

140,918,110

A

− 0.4395

0.002672

1.91E-59

cg16191297

140,926,659

AX748239

15

rs4776894

67,416,445

C

− 0.4491

0.002948

4.42E-58

cg07882838

67,417,557

SMAD3

2

rs6706223

33,944,002

G

0.4457

0.002985

1.00E-57

cg04131969

33,951,597

MYADML

6

rs9380143

29,802,045

T

− 0.4285

0.002918

2.00E-57

cg03570263

30,040,291

RNF39

13

rs1040961

40,108,008

G

0.4481

0.003182

1.10E-56

cg17707870

40,107,957

AK021977

4

rs5856334

16,076,153

AT

0.4034

0.002962

4.31E-56

cg17858192

16,077,757

PROM1

4

rs6854452

39,446,337

A

0.4776

0.003507

4.33E-56

cg19311470

39,460,490

RPL9

11

rs73555593

107,462,942

A

0.4321

0.003249

1.15E-55

cg22355889

107,461,585

ELMOD1

3

rs1054190

119,536,718

T

− 0.3963

0.002991

1.32E-55

cg12414339

119,536,718

NR1I2

1

rs6687657

33,599,737

T

− 0.4317

0.003277

1.68E-55

cg12386614

33,608,003

AX747064

7

rs62444879

2,048,470

G

− 0.4355

0.003316

1.90E-55

cg03723481

2,071,723

MAD1L1

11

rs10750097

116,664,040

G

0.4412

0.003384

2.59E-55

cg12556569

116,663,989

APOA5

19

rs1433089

52,506,985

C

− 0.435

0.003369

3.81E-55

cg01561758

52,514,395

ZNF615

6

rs138009982

170,453,220

A

0.4368

0.003437

7.35E-55

cg11400162

170,455,448

LOC154449

2

rs61702354

25,970,644

A

0.3672

0.002935

1.40E-54

cg17717333

26,101,647

ASXL2

14

rs35595004

52,733,244

A

− 0.4397

0.00357

2.64E-54

cg23022053

52,733,193

PTGDR

10

rs10900074

45,071,312

A

− 0.427

0.003469

2.70E-54

cg02113055

45,072,470

CXCL12

12

rs928993

52,798,364

A

− 0.4268

0.003471

2.83E-54

cg19393008

52,798,313

KRT82

6

rs3130978

31,082,188

A

− 0.4033

0.003301

3.65E-54

cg24926791

31,082,137

PSORS1C1

21

rs1721

46,349,496

T

− 0.4368

0.003577

3.76E-54

cg02464073

46,349,496

ITGB2

9

rs11789671

120,504,614

A

− 0.414

0.003395

3.94E-54

cg21242448

120,510,244

TLR4

11

rs11230502

60,607,476

A

− 0.4072

0.003374

6.09E-54

cg06394820

60,608,241

CCDC86

12

rs7139321

123,719,528

T

0.4466

0.00372

7.49E-54

cg09084244

123,757,810

CDK2AP1

7

rs1108056

101,834,081

A

− 0.4386

0.003676

9.75E-54

cg18088486

101,837,098

SH2B2

1

rs284307

10,739,255

C

− 0.3581

0.003024

1.33E-53

cg13387643

10,737,562

Mir_584

12

rs10777168

76,651,353

C

0.407

0.003444

1.43E-53

cg26864661

76,661,181

BBS10

20

rs6073257

42,561,422

C

0.3894

0.00333

2.19E-53

cg26365090

42,574,362

TOX2

16

rs12149056

58,690,964

A

− 0.4447

0.003819

2.62E-53

cg05876883

58,704,445

SLC38A7

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Clinical Epigenetics

ISSN: 1868-7083

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