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Table 2 Top 30 most significant cis-mQTLs in endometrium

From: Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases

CHR

SNP

BP

A1

BETA

SE

P value

DNAm probe site ID

Probe start (hg19)

Closest TSS gene name

3

rs6783741

43,455,926

T

0.4525

0.00261

2.23E-60

cg11035303

43,465,453

SNRK

4

rs5856334

16,076,153

AT

0.3958

0.002547

1.94E-58

cg17858192

16,077,757

PROM1

3

3:61237223:T:C

61,237,223

T

0.4387

0.002831

2.20E-58

cg17573813

61,237,223

FHIT

14

rs12436555

24,634,825

A

− 0.4469

0.003038

1.85E-57

cg02898977

24,662,177

IPO4

11

rs73555593

107,462,942

A

0.4494

0.003092

3.00E-57

cg22355889

107,461,585

ELMOD1

4

rs6854452

39,446,337

A

0.4824

0.003458

1.62E-56

cg19311470

39,460,490

RPL9

17

rs3833162

27,071,442

G

0.6435

0.004835

1.10E-55

cg04212500

27,184,483

ERAL1

20

rs3764715

1,287,051

A

− 0.3891

0.002947

1.52E-55

cg17341969

1,287,000

SDCBP2

1

rs6697965

220,943,801

C

0.4621

0.003507

1.67E-55

cg12466610

220,950,155

MARCH12

17

rs9897355

80,078,095

G

0.4414

0.003403

3.19E-55

cg25388952

80,084,596

CCDC57

13

rs1040961

40,108,008

G

0.4808

0.003773

6.55E-55

cg17707870

40,107,957

AK021977

5

rs113644940

174,915,503

T

− 0.4505

0.003674

3.16E-54

cg20462978

174,911,722

SFXN1

6

rs660594

31,837,250

G

0.3695

0.003024

3.66E-54

cg20370184

31,838,494

SLC44A4

3

rs76046201

15,365,139

T

− 0.4432

0.003671

5.98E-54

cg09627057

15,377,670

SH3BP5

2

rs6706223

33,944,002

G

0.4451

0.00374

1.07E-53

cg04131969

33,951,597

MYADML

6

rs9380143

29,802,045

T

− 0.4279

0.003698

3.38E-53

cg03570263

30,040,291

RNF39

6

rs138009982

170,453,220

A

0.4388

0.003921

1.33E-52

cg11400162

170,455,448

LOC154449

6

rs72860388

32,904,703

T

− 0.3676

0.003288

1.38E-52

cg21992044

32,918,073

HLA-DMA

7

rs7807520

2,087,545

C

− 0.4547

0.004083

1.63E-52

cg21598190

2,099,404

MAD1L1

9

rs13299342

136,141,504

A

− 0.4277

0.003848

1.74E-52

cg13683939

136,152,547

ABO

1

rs35195267

92,398,884

T

0.3806

0.003438

2.08E-52

cg01081438

92,417,998

BRDT

15

rs376992916

65,245,209

T

− 0.4207

0.003825

2.68E-52

cg25879395

65,272,510

SPG21

8

rs11167041

142,258,889

A

− 0.4478

0.004167

6.95E-52

cg04123498

142,283,514

SLC45A4

8

rs12675160

140,918,110

A

− 0.4302

0.004021

8.29E-52

cg16191297

140,926,659

AX748239

7

rs1108056

101,834,081

A

− 0.4235

0.003977

1.01E-51

cg18088486

101,837,098

SH2B2

7

rs798558

2,758,935

G

− 0.4117

0.003963

2.79E-51

cg17393140

2,764,079

AMZ1

1

rs12074147

40,203,722

C

− 0.4137

0.004

3.35E-51

cg07703391

40,225,995

AB075489

8

rs7822181

10,049,872

T

− 0.4409

0.00427

3.57E-51

cg26077133

10,049,821

MSRA

12

rs7139321

123,719,528

T

0.4135

0.004077

7.40E-51

cg09084244

123,757,810

CDK2AP1

11

rs678679

35,608,275

T

− 0.4807

0.004747

7.90E-51

cg26465155

35,611,044

FJX1

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Clinical Epigenetics

ISSN: 1868-7083

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