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Table 1 TCGA studies and sample numbers used for DNA methylation analyses in this study

From: Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Study Study name/tumor entity Tumors Normals
ACC Adrenocortical carcinoma 79 0
BLCA Bladder urothelial carcinoma 368 17
BRCA Breast invasive carcinoma 772 96
CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma 299 3
CHOL Cholangiocarcinoma 35 9
COAD Colon adenocarcinoma 265 30
DLBC Lymphoid Neoplasm Diffuse Large B-Cell Lymphoma 47 0
ESCA Esophageal carcinoma 182 13
GBM Glioblastoma multiforme 129 2
HNSC Head and neck squamous cell carcinoma 481 50
KICH Kidney chromophobe 60 0
KIRC Kidney renal clear cell carcinoma 271 141
KIRP Kidney renal papillary cell carcinoma 243 34
LGG Brain lower grade glioma 498 0
LIHC Liver hepatocellular carcinoma 360 45
LUAD Lung adenocarcinoma 399 22
LUSC Lung squamous cell carcinoma 337 36
MESO Mesothelioma 82 0
OV Ovarian adenocarcinomas 10 0
PAAD Pancreatic adenocarcinoma 155 7
PCPG Pheochromocytoma and paraganglioma 152 3
PRAD Prostate adenocarcinoma 476 40
READ Rectum adenocarcinoma 91 7
SARC Sarcoma 244 0
SKCM Skin cutaneous melanoma 102 1
STAD Stomach adenocarcinoma 388 2
TGCT Testicular germ cell tumors 149 0
THCA Thyroid carcinoma 484 54
THYM Thymoma 122 2
UCEC Uterine Corpus Endometrial Carcinoma 404 45
UCS Uterine carcinosarcoma 56 0
UVM Uveal melanoma 80 0