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Table 1 TCGA studies and sample numbers used for DNA methylation analyses in this study

From: Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer

Study

Study name/tumor entity

Tumors

Normals

ACC

Adrenocortical carcinoma

79

0

BLCA

Bladder urothelial carcinoma

368

17

BRCA

Breast invasive carcinoma

772

96

CESC

Cervical squamous cell carcinoma and endocervical adenocarcinoma

299

3

CHOL

Cholangiocarcinoma

35

9

COAD

Colon adenocarcinoma

265

30

DLBC

Lymphoid Neoplasm Diffuse Large B-Cell Lymphoma

47

0

ESCA

Esophageal carcinoma

182

13

GBM

Glioblastoma multiforme

129

2

HNSC

Head and neck squamous cell carcinoma

481

50

KICH

Kidney chromophobe

60

0

KIRC

Kidney renal clear cell carcinoma

271

141

KIRP

Kidney renal papillary cell carcinoma

243

34

LGG

Brain lower grade glioma

498

0

LIHC

Liver hepatocellular carcinoma

360

45

LUAD

Lung adenocarcinoma

399

22

LUSC

Lung squamous cell carcinoma

337

36

MESO

Mesothelioma

82

0

OV

Ovarian adenocarcinomas

10

0

PAAD

Pancreatic adenocarcinoma

155

7

PCPG

Pheochromocytoma and paraganglioma

152

3

PRAD

Prostate adenocarcinoma

476

40

READ

Rectum adenocarcinoma

91

7

SARC

Sarcoma

244

0

SKCM

Skin cutaneous melanoma

102

1

STAD

Stomach adenocarcinoma

388

2

TGCT

Testicular germ cell tumors

149

0

THCA

Thyroid carcinoma

484

54

THYM

Thymoma

122

2

UCEC

Uterine Corpus Endometrial Carcinoma

404

45

UCS

Uterine carcinosarcoma

56

0

UVM

Uveal melanoma

80

0