Table 2 List of genes interrogated in this study, mapping information, coordinates, and imprinting status
Gene | Description | Reference | Map | RefSEQ | Position | UCSC h19 coordinates | Amplicon length | Position with respect to the TSS | Number of interrogated CpG | Imprinting status |
|---|---|---|---|---|---|---|---|---|---|---|
ZAP70 | Zeta chain of T cell receptor-associated protein kinase 70 | 15; 19 | 2q11.2 | NM_001079 | Exon 3 | Chr2 98340750–98340885 | 180 | 10,728 | 20 | No |
GP1BB | Glycoprotein Ib platelet beta subunit | 15; 19 | 22q11.21 | NM_000407 | Exon 1 | Chr22: 19710829–19710960 | 192 | 363 | 18 | No |
KIF1A | Kinesin family member 1A | 15; 5 | 2q37.3 | NM_001244008 | Exon 1 | Chr2: 241759586–241759727 | 189 | −1 | 27 | No |
PARP15 | Poly(ADP-ribose) polymerase family member 15 | 20 | 3q21.1 | NM_001113523 | Exon 1 | Chr3:122296564–122296725 | 206 | 93 | 19 | No |
ITGA4 | Integrin subunit alpha 4 | 20 | 2q31.3 | NM_000885 | Exon 2 | Chr2: 182322887–182323053 | 214 | 912 | 14 | No |
NTM | Neurotrimin | 20 | 11q25 | NM_016522 | Exon 1 | Chr11: 131781042–131781185 | 190 | 62 | 15 | Yes, maternal, No SNP |
MIR193A | MicroRNA 193a | 18; 60 | 17q11.2 | NR_029710 | Promoter | Chr17: 29886860–29887068 | 256 | −178 | 26 | No |
MIR137HG | MIR137 host gene7 | 15; 19; 41 | 1p21.3 | NR_046105 | Exon 1 | Chr1: 98511645–98511814 | 216 | 136 | 16 | No |
EPHX3 | Epoxide hydrolase 3 | 20 | 19p13.12 | NM_024794 | Exon 1 | Chr19: 15342826–15343049 | 223 | 215 | 29 | No |
LINC00599 | Long intergenic non-protein coding RNA 599 | 20 | 8p23.1 | NR_029668 | Exon 1 | Chr8: 9760739–9760890 | 199 | 69 | 20 | No |
FLI1 | Fli-1 proto-oncogene, ETS transcription factor | 20 | 11q24.3 | NM_001271010 | Exon 1 | Chr11: 128564020–128564160 | 186 | 187 | 12 | No |
MIR296 | MicroRNA 296 | 20; 51 | 20q13.32 | NR_029844 | Exon 1 | Chr20: 57392355–57392545 | 238 | 180 | 15 | Yes, paternal, No SNP |
LRRTM1 | Leucine-rich repeat transmembrane neuronal 1 | 20 | 2p12 | NM_178839 | Promoter | Chr2: 80531676–80531807 | 179 | −431 | 24 | Yes, paternal, No SNP |
TERT | Telomerase reverse transcriptase | 53 | 5p15.33 | NM_198253 | Intron4–5 | Chr5: 1279743–1279851 | 109 | 14,976 | 6 | No, SNP at rs10069690 |
DNMT1 | DNA methyltransferase 1 | 26 | 19p13.2 | NG_028016.3 | Exon 1 | Chr19: 10305498–10305665 | 216 | 142 | 28 | Yes, paternal, No SNP |
TERC | Telomerase RNA component | 22 | 3q26.1 | NG_016363.1 | Exon 1 | Chr3: 169764557–169764699 | 191 | 357 | 19 | No |
PAX1 | Paired box 1 | 20 | 20p11.23 | NM_001257096 | Exon 1 | Chr20: 21705602–21705713 | 159 | −60 | 13 | No |
H19 | H19 conserved region 1 | 24 | 11p15.4 | NR_002196 | Exon 1 | Chr11: 1996891–1997062 | 219 | 159 | 13 | Yes, maternal, SNP rs2067051 |
LINE1 | Long interspersed element 1 | 36; 25 | Wide | M80343.1 | Exon 1 | Genome-wide distribution | 267 | 458 | 21 | No |