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Table 6 Look-up in the Korean COPD cohort of CpGs reported at least two epigenome-wide association studies (70 CpGs at FDRg < 0.05, ordered by chromosomal location)

From: DNA methylation and smoking in Korean adults: epigenome-wide association study

Chra

Gene

Distance to geneb

Probe

Coefc

P d

Referencese

1

GNG12

 

cg25189904f

−0.134

1.4E−06

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Tsaprouni et al. 2014[18]; Zhu et al. 2016 [26].

 

cg26764244

−0.055

0.010

Guida et al. 2015 [12]; Harlid et al. 2014[17].

GFI1

 

cg12876356f

−0.049

8.9E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg18316974

−0.014

0.006

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22].

 

cg09935388

−0.106

8.1E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

AVPR1B

 

cg08709672f

−0.058

1.1E−06

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg20295214

−0.068

3.5E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22].

PSEN2

−55213

cg03547355

−0.034

0.016

Guida et al. 2015 [12]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22].

2

LINC00299

195809

cg23079012f

−0.023

3.8E−04

Besingi and Johansson 2014 [14]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

NFE2L2

 

cg26271591f

−0.061

8.3E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22].

GPR55

 

cg19827923

−0.022

0.012

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

ALPP

 

cg23667432

−0.027

0.013

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22].

ECEL1P2

−90

cg27241845

−0.081

4.1E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Tsaprouni et al. 2014[18].

ALPPL2

11777

cg03329539f

−0.064

3.9E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

12850

cg05951221f

−0.088

8.4E−09

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Harlid et al. 2014[17]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Shenker et al. 2013[19]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

13382

cg01940273

−0.090

1.4E−06

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Shenker et al. 2013[19]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

13737

cg13193840f

−0.027

1.1E−04

Guida et al. 2015 [12]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

SNED1

 

cg26718213

0.091

0.005

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14].

3

GPX1

 

cg18642234

−0.042

0.005

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

GPR15

 

cg19859270

−0.027

1.0E−07

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Harlid et al. 2014[17]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Sun et al. 2013[20]; Zeilinger et al. 2013 [22]; Wan et al. 2012[24]; Breitling et al. 2011[25]; Zaghlool et al. 2015[13]; Zhu et al. 2016 [26].

CPOX

 

cg02657160

−0.030

1.8E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Harlid et al. 2014[17]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22].

5

AHRR

 

cg11554391

−0.043

2.5E−04

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg12806681f

−0.015

0.009

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg23916896f

−0.063

0.006

Guida et al. 2015 [12]; Dogan et al. 2014[15]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg01899089f

−0.054

0.003

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Zeilinger et al. 2013[22].

 

cg05575921f

−0.203

6.5E−13

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Harlid et al. 2014[17]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Shenker et al. 2013[19]; Zeilinger et al. 2013 [22]; Zaghlool et al. 2015[13]; Philibert et al. 2012[23]; Philibert et al. 2013[21]; Zhu et al. 2016 [26].

 

cg14817490

−0.078

4.7E−06

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zaghlool et al. 2015[13]; Zhu et al. 2016 [26].

 

cg17287155

−0.023

1.8E−04

Guida et al. 2015 [12]; Dogan et al. 2014[15]; Zhu et al. 2016 [26].

 

cg04551776

−0.038

1.3E−04

Guida et al. 2015 [12]; Elliott et al. 2014 [16]; Zhu et al. 2016 [26].

 

cg25648203

−0.079

6.2E−07

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Tsaprouni et al. 2014[18]; Zhu et al. 2016 [26].

 

cg24090911

−0.039

0.009

Guida et al. 2015 [12]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

6

IER3

9104

cg06126421

−0.101

2.6E−04

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Shenker et al. 2013[19]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

9132

cg14753356f

−0.062

1.7E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

9227

cg24859433

−0.037

0.003

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

9233

cg15342087

−0.030

0.009

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Tsaprouni et al. 2014[18]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

7

GNA12

 

cg18446336

−0.074

0.011

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

MYO1G

 

cg19089201

0.056

3.5E−05

Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg22132788

0.092

2.7E−06

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Philibert et al. 2012[23]; Philibert et al. 2013[21]; Zhu et al. 2016 [26].

 

cg04180046

0.103

2.3E−05

Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg12803068

0.156

4.8E−06

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Philibert et al. 2012[23]; Philibert et al. 2013[21]; Zhu et al. 2016 [26].

CNTNAP2

 

cg21322436

−0.026

0.016

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg25949550

−0.026

5.2E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

8

MYST3

 

cg14316231

−0.029

0.007

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

9

SLC44A1

−1580

cg01692968f

−0.038

0.004

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

10

ZMIZ1

 

cg03450842f

−0.041

0.004

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14].

11

KCNQ1OT1

 

cg01744331

−0.030

8.4E−04

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22].

 

cg07123182f

−0.031

1.1E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg16556677f

−0.051

6.7E−04

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

 

cg26963277f

−0.043

6.2E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

LRP5

 

cg21611682

−0.045

0.005

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Tsaprouni et al. 2014[18]; Zhu et al. 2016 [26].

 

cg10420527

−0.031

0.013

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

 

cg14624207f

−0.040

0.002

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

ARRB1

 

cg01901332

−0.057

0.008

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22].

PRSS23

 

cg23771366

−0.062

0.002

Guida et al. 2015 [12]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

12

ETV6

 

cg07986378f

−0.069

3.6E−04

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zhu et al. 2016 [26].

14

C14orf43

 

cg01731783

−0.025

0.009

Guida et al. 2015 [12]; Dogan et al. 2014[15]; Elliott et al. 2014 [16]; Zeilinger et al. 2013 [22].

ITPK1

 

cg05284742

−0.055

2.5E−05

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

15

SEMA7A

 

cg00310412

−0.036

0.008

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22].

ANPEP

 

cg23161492

−0.055

0.001

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

16

XYLT1

 

cg16794579f

−0.039

0.004

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14].

FBRS

−4029

cg07069636

−0.023

0.006

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

17

LOC100130933

 

cg07251887f

−0.070

2.4E−04

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22].

19

CIRBP

−1591

cg00073090

−0.031

0.002

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

MOBKL2A

 

cg15187398

−0.048

0.013

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

MIR23A

3767

cg05339037

−0.025

0.008

Guida et al. 2015 [12]; Zhu et al. 2016 [26].

F2RL3

 

cg03636183f

−0.128

2.0E−08

Allione et al. 2015 [11]; Guida et al. 2015 [12]; Besingi and Johansson 2014 [14]; Dogan et al. 2014[15]; Harlid et al. 2014[17]; Elliott et al. 2014 [16]; Tsaprouni et al. 2014[18]; Shenker et al. 2013[19]; Sun et al. 2013[20]; Zeilinger et al. 2013 [22]; Wan et al. 2012[24]; Breitling et al. 2011[25]; Zaghlool et al. 2015[13]; Zhu et al. 2016 [26].

PPP1R15A

 

cg03707168

−0.034

0.009

Guida et al. 2015 [12]; Besingi and Johansson 2014 [14].

20

ATP9A

 

cg07339236

−0.039

1.0E−04

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

21

NCRNA00114

 

cg06595162f

−0.034

0.005

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22].

22

NCF4

 

cg02532700

−0.049

0.003

Guida et al. 2015 [12]; Zeilinger et al. 2013 [22]; Zhu et al. 2016 [26].

  1. aChromosome
  2. bDistance to transcription start site of the mapped gene (basepair, National Center for Biotechnology Information human reference genome assembly Build 37.3)
  3. cRegression coefficient from statistical model
  4. dStatistical significance from statistical model
  5. eArticles reporting CpGs as smoking-associated differential methylation sites at genome-wide level
  6. fProbe differentially methylated in both current and former smokers compared to never smokers in our epigenome-wide association study
  7. gCorrection for 18 tests at the look-up