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Table 2 Whole genome MSREs coverage of CpGs in human genomic DNA [4]

From: MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research

MSRE Recognition sequence Percentage coverage of CpGs in human gDNA (%) Number of fragments (per kb) in CpG islands Number of fragments (per kb) in non-CpG islands
HpaII C^CGG 8.6 3.98 1.18
Hin6I G^CGC 6.4 3.98 0.61
AciI C^CGC 17.4 3.23 1.79
HpyCh4IV A^CGT 6.6 1.31 1.08
Bsu15I AT^CGAT 0.2 <0.01 0.02
NarI GG^CGCC 0.6 1.08 <0.01
Bsp119I TT^CGAA 0.1 0.11 <0.01
Psp1406I AA^CGTT 0.3 <0.01 0.05
XmiI GT^MKAC 0.1 0.19 0.34
Hin1I GR^CGYC 2 1.92 0.11