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Table 2 Seventy significantly hypermethylated genes in high-risk NB patients

From: Two independent epigenetic biomarkers predict survival in neuroblastoma

Genes Total probes Sig. probes ID. Sig. probes P values
ANKRD30A 2 1 cg18493238 0.044554738
AYTL2 2 1 cg05365670 0.035713814
C14orf162 2 1 cg14912575 0.005363655
C1orf177 2 1 cg20903926 0.012915253
CCND1 18 2 cg11802013, cg07339327 0.0341943541, 0.047611226
CD164L2 2 1 cg15166089 0.021147357
CD3Z 1 1 cg09554443 0.018393493
CDH20 1 1 cg18509435 0.047064214
CGB1 2 1 cg17164520 0.020905647
CNNM1 2 1 cg15430659 0.020905647
CPZ 2 1 cg03292388 0.022686711
CRYAA 2 1 cg19378039 0.004448711
CSH1 2 1 cg11880211 0.035724213
CSMD2 2 1 cg05382123 0.035713814
CTSZ 7 1 cg01663968 0.037116693
DUSP2 2 1 cg01148741 0.012020747
ECRG4 2 1 cg10885338 0.004398444
ENTPD3 2 1 cg17200465 0.022686711
FLJ21736 2 1 cg09407859 0.039315449
FLJ30313 2 1 cg11682508 0.035713814
FLJ39822 2 1 cg04143809 0.047611226
FUT6 2 1 cg05444024 0.03549584
GBGT1 2 1 cg01169778 0.037116693
GDPD2 2 1 cg08254263 0.034194354
GGT6 2 1 cg22628873 0.010030882
GNGT2 2 2 cg17839611, cg24456340 0.0135039944, 0.0183934926
GPR1 1 1 cg19132372 0.047064214
GPR55 2 2 cg20287234, cg13531460 0.005474794, 0.0343533092
HIST1H1A 2 1 cg14652095 0.021147357
HOXB1 2 1 cg17233506 0.020905647
HPN 2 1 cg24715735 0.022686711
JAK2 1 1 cg20394284 0.035713814
KCNQ1 23 1 cg01734338 0.034194354
KRT5 2 2 cg23645091, cg04254916 0.0067809343, 0.0072736595
KRTHB3 2 1 cg19258973 0.012020747
KRTHB5 2 1 cg06132342 0.000549806
KRTHB6 2 2 cg04123507, cg16911220 0.000926591, 0.0053636552
LAT1-3TM 1 1 cg19889584 0.013503994
LOC161931 2 1 cg17561452 0.044554738
LRRC4 2 1 cg21129531 0.013503994
LY6D 2 1 cg05800321 0.032446014
MAGEA2 2 1 cg01743008 0.034353309
MGC35169 2 1 cg16384137 0.021877651
MGMT 26 1 cg02330106 0.031115525
MKNK2 2 1 cg21030400 0.031115525
MSH4 2 1 cg22035229 0.044554738
MUC5B 2 1 cg22407504 0.030056033
NNAT 7 3 cg22510412, cg12862537, cg21588305 0.0182304654, 0.0211473571, 0.0324460138
PADI3 2 1 cg01459162 0.010896145
PAX8 2 1 cg25042226 0.007819456
PECAM1 2 1 cg03886110 0.021147357
PIP5K2A 2 1 cg26368842 0.047611226
PLA2G12B 2 1 cg21820890 0.015211786
POLR3H 1 1 cg02738086 0.044554738
PSCD4 2 1 cg05259765 0.012683212
PTGER1 2 1 cg10468702 0.022686711
PTGIR 2 1 cg11822964 0.035713814
RB1 21 1 cg07880715 0.047611226
RUNX3 19 2 cg04757093, cg25178645 0.0004487598, 0.0390263555
SCNN1A 2 1 cg18738906 0.044000585
SMPX 2 1 cg05856884 0.035713814
SPO11 2 1 cg13888886 0.001023813
TBX4 2 1 cg03866607 0.006780934
TDGF1 2 1 cg10242476 0.037116693
THEG 1 1 cg27227797 0.030056033
TP73 12 3 cg03846767, cg26208930, cg25115460 0.0038887033, 0.0324460138, 0.0470642136
TPM1 2 1 cg00520135 0.007819456
TRIP10 2 1 cg02085507 0.037116693
TSPAN32 2 1 cg00041575 0.007819456
ZNF80 2 1 cg13334054 0.012599325