Table 4 Fusion gene screening by RNA sequencing
From: DNA methylation-based subtype prediction for pediatric acute lymphoblastic leukemia
Sample ID | Subtype | Methylation subtype a | FISH/PCR | Read pairs | Fusion gene |
|---|---|---|---|---|---|
ALL_176 | Non-recurrent | t(1;19)* | t(1;19) Not tested | 84.3 M | No fusion detected |
ALL_392 | Normal | t(1;19)* | t(1;19) Negative | 94.4 M | No fusion detected |
ALL_390 | Normal | t(1;19)* | t(1;19) Negative | 102.6 M | No fusion detected |
ALL_11 | No result | t(12;21)* | t(12;21) Not tested | 99.5 M | t(20;21)RUNX1/ASXL1 |
ALL_106 | HeH | t(12;21)* | t(12;12) Negative | 57.3 M | t(7;12)CBX3/ETV6 |
ALL_495 | Normal | t(12;21)* | t(12;21) Negative | 32.1 M | t(3;12)ETV6/AK125726 |
ALL_391 | Non-recurrent | dic(9;20)* | NA | 98.6 M | No fusion detected |
ALL_58 | Non-recurrent | Non-class | NA | 89.0 M | No fusion detected |
ALL_61 | Normal | Non-class | NA | 101.8 M | No fusion detected |
ALL_Validation_20 | HeH | Non-class | NA | 19.0 M | t(5;15)BRD9/NUTM1 |
ALL_313 | Non-recurrent | Multi-class | NA | 116.7 M | No fusion detected |
ALL_619 | Non-recurrent | Multi-class | NA | 84.3 M | t(9;14)PAX5/ESRRB |
ALL_403 | Non-recurrent | Multi-class | NA | 95.2 M | inv(9)PAX5/ZCCHC7 |
ALL_246 | Non-recurrent | Multi-class | NA | 120.5 M | t(9;12)PAX5/ETV6 |
ALL_485 | Non-recurrent | Multi-class | NA | 90.6 M | t(9;12)PAX5/ETV6 |
ALL_373 | Non-recurrent | Multi-class | NA | 96.2 M | del(X)P2RY8/CRLF2 |
ALL_497 | Non-recurrent | Multi-class | NA | 89.7 M | No fusion detected |