Table 1 Interspersed repetitive sequence hypomethylation in cancer
From: Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications
Type of cancer | Repeated sequence | Hypomethylation | Reference |
|---|---|---|---|
Abdominal paragangrioma | LINE-1 | Yes | Geli et al. (2008) |
Breast cancer | Alu | Yes | Cho et al. (2010) |
LINE-1 | Yes | Cho et al. (2010) | |
Cervical cancer | LINE-1 | Yes | Shuangshoti et al. (2007) |
Cholangiocarcinoma | LINE-1 | Yes | Kim et al. (2009a) |
Colorectal cancer | Alu | Yes | |
LINE-1 | Yes | Chalitchagorn et al. (2004; Suter et al. (2004); Matsuzaki et al. (2005); Estecio et al. (2007); Iacopetta et al. (2007); Ogino et al. (2008a); Nosho et al. (2009a, b); An et al. (2010); Baba et al. (2010); Ibrahim et al. (2011); Irahara et al. (2010); Kawakami et al. (2011); Kwon et al. (2010) | |
Ependymoma | Alu | Yes | Xie et al. (2010) |
Esophagus cancer | LINE-1 | Yes | Chalitchagorn et al. (2004) |
Gastric cancer | Alu | Yes | Yoo et al. (2008); Park et al. (2009); Hou et al. (2010); Xiang et al. (2010); Yoshida et al. (2011) |
LINE-1 | Yes | Chalitchagorn et al. (2004; Yoo et al. (2008); Park et al. (2009); Yoshida et al. (2011) | |
Germ cell tumor | LINE-1 | Yes | Alves et al. (1996) |
Fibrolamellar carcinoma of liver | LINE-1 | No | Trankenschuh et al. (2010) |
Head and neck squamous cell cancer | LINE-1 | Yes | Chalitchagorn et al. (2004); Hsiung et al. (2007); Smith et al. (2007); Subbalekha et al. (2009) |
Hepatoma | Alu | Yes | Lee et al. (2009) |
LINE-1 | Yes | Takai et al. (2000); Chalitchagorn et al. (2004); Tangkijvanich et al. (2007); Lee et al. (2009); Kim et al. (2009b); Formeister et (al. 2010); Trankenschuh et al. (2010) | |
Leukemia (acute promyelocytic leukemia) | Alu Yb8 | No | Choi et al. (2009) |
LINE-1 | No | Choi et al. (2009) | |
Leukemia (chronic myelogenous leukemia) | Alu | Yes | |
LINE-1 | Yes | Roman-Gomez et al. (2008); Roman-Gomez et al. (2005); Fabris et al. (2011) | |
Leukemia (plasma cell leukemia) | LINE-1 | Yes | Bollati et al. (2009) |
Lung cancer (non-small cell lung cancer) | Alu | Yes | Daskalos et al. (2009) |
LINE-1 | Yes | Chalitchagorn et al. (2004); Daskalos et al. (2009); Jin et al. (2009); Saito et al. (2010) | |
Lymphoma | LINE-1 | No | Chalitchagorn et al. (2004) |
Malignant peripheral nerve sheath tumor | LINE-1 | No | Feber et al. (2011) |
Melanoma | LINE-1 | Yes | Tellez et al. (2009) |
Multiple myeloma | Alu | Yes | Bollati et al. (2009) |
LINE-1 | Yes | Bollati et al. (2009) | |
Neuroendocrine tumor | Alu | Yes | Choi et al. (2007) |
LINE-1 | Yes | Choi et al. (2007) | |
Neurofibromatosis | LINE-1 | No | Feber et al. (2011) |
Ovarian cancer | AluHER | Yes | Watts et al. (2008) |
V-W | Yes | Menendez et al. (2004) | |
LINE-1 | Yes | Menendez et al. (2004); Pattamadilok et al. (2008); Woloszynska-Read et al. (2008); Dammann et al. (2010) | |
Parathyroid adenoma | LINE-1 | No | Juhlin et al. (2010) |
Pheochromocytoma | LINE-1 | Yes | Geli et al. (2008) |
Prostate cancer | Alu | Yes | Kim et al. (2011) |
LINE-1 | Yes | Santourlidis et al. (1999; Schulz et al. (2002); Chalitchagorn et al. (2004); Florl et al. (2004); Kindich et al. (2006); Yegnasubramanian et al. (2008); Cho et al. (2009) | |
Renal cell carcinoma | LINE-1 | No | |
Thyroid cancer (follicular type) | LINE-1 | No | Lee et al. (2008) |
Thyroid cancer (papillary type) | LINE-1 | No | Chalitchagorn et al. (2004) |
Urothelial cancer | HERV-K | Yes | Florl et al. (1999) |
Alu Yb8 | Yes | Choi et al. (2009) | |
LINE-1 | Yes | Jurgens et al. (1996); Florl et al. (1999); Neuhausen et al. (2006); Choi et al. (2009); Wilhelm et al. (2010); Wolff et al. (2010) |