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Table 2 Top differentially methylated CpGs between female African American patients with SSc and controls ranked by absolute effect size

From: Distinct genome-wide DNA methylation and gene expression signatures in classical monocytes from African American patients with systemic sclerosis

CpG

Gene

Chr

Position (kb)

Relation to Island

Control β

SSc β

Difference

p value

Adjusted p value

cg22805491

NIN

14

51,172

OpenSea

0.44

0.53

0.09

2.99E−08

0.02

cg24073653

SLC41A2

12

105,221

OpenSea

0.61

0.69

0.08

2.92E−06

0.2

cg19933320

ZNF107

7

64,125

N_Shore

0.33

0.4

0.08

8.20E−06

0.35

cg06548512

LOC728989

1

146,522

Island

0.63

0.7

0.07

1.32E−07

0.05

cg00832928

SELENOT

3

150,329

Island

0.61

0.68

0.07

4.58E−07

0.11

cg08653580

CD5

11

60,862

OpenSea

0.66

0.73

0.07

1.21E−06

0.16

cg12601237

ST8SIA6

10

17,429

OpenSea

0.71

0.78

0.07

3.69E−06

0.21

cg14115740

FANCC

9

98,055

Island

0.57

0.64

0.07

4.74E−06

0.24

cg22167498

RAB11B-AS1

19

8451

N_Shelf

0.57

0.62

0.06

1.00E−06

0.16

cg23596249

MARCHF1

4

165,110

Island

0.51

0.57

0.06

1.85E−06

0.19

cg13704629

DCAF4

14

73,396

S_Shelf

0.56

0.62

0.06

2.73E−06

0.2

cg11652329

P2RX6P

22

21,399

N_Shore

0.61

0.67

0.05

4.74E−06

0.24

cg26715639

S100A11

1

151,986

OpenSea

0.6

0.65

0.05

6.43E−06

0.31

cg23493751

CCR3

3

46,205

OpenSea

0.75

0.8

0.05

7.64E−06

0.34

cg08288426

ZSCAN29

15

43,651

OpenSea

0.8

0.76

− 0.04

1.51E−06

0.17

cg18507060

OAS3

12

113,399

OpenSea

0.77

0.81

0.04

5.48E−07

0.11

cg10044900

CFAP44

3

113,058

OpenSea

0.76

0.8

0.04

2.55E−06

0.2

cg14929421

ACTR3BP2

2

92,318

OpenSea

0.52

0.55

0.03

2.80E−06

0.2

cg04331667

CCDC71L

7

106,171

OpenSea

0.8

0.83

0.03

3.21E−06

0.2

  1. CpGs are shown, along with nearest gene, annotation, averaged methylation levels (β), methylation difference, unadjusted and adjusted p values