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Table 4 MAD1L1 depression-related SNPs from GWAS Catalog and DisGeNet

From: Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression

SNP

Chrom

Start hg19

End hg19

Ref. allele

Alt. allele

MAF

Associated gene

Uniprot ID

Functional impact

rs56072378

chr7

2104363

2104364

A

G

25 ± 5%

Min: 20%, Max: 32%

MAD1L1

Q9Y6D9

Intron Variant

rs11772627

chr7

2109820

2109821

G

AC

18 ± 4%

Min: 15%, Max: 27%

MAD1L1

Q9Y6D9

Intron Variant

rs3823624

chr7

2110345

2110346

T

C

18 ± 4%

Min: 12%, Max: 27%

MAD1L1

Q9Y6D9

Intron Variant

rs2056477

chr7

2079743

2079744

G

ACT

28 ± 5%

Min: 25%, Max: 32%

MAD1L1

Q9Y6D9

Intron Variant

rs11514731

chr7

2051502

2051503

C

G

18 ± 4%

Min: 15%, Max: 27%

MAD1L1

Q9Y6D9

Intron Variant

rs61409925

chr7

1971225

1971226

G

A

18 ± 4%

Min: 14%, Max: 25%

MAD1L1

Q9Y6D9

Intron Variant

  1. This table shows the properties of the investigated SNPs. Data were obtained from the NCBI dbSNP portal. MAF is shown as a mean percent for several populations ± standard deviation of the percent. SNP, single nucleotide polymorphism; NCBI, National Center for Biotechnology Information; Chrom, chromosome; Ref, reference; Alt, alternate; MAF, minor allele frequency