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Table 4 Primer sequences

From: The CpG island methylator phenotype increases the risk of high-grade squamous intraepithelial lesions and cervical cancer

Gene

5′ to 3′

Tm °C

 

AJAP1

M

F: TTTGGTAGAGTTTTTCGATTCGGTAGC

R: ACCGAAACTCCGCGCCGATAA

60

U

F: TTTGGTAGAGTTTTTTGATTTGGTAGT

R: CCAAAACTCCACACCAATAA

55

CDH1

M

F: TTAGGTTAGAGGGTTATCGCGT

R: TAACTAAAATTCACCTACCGAC

57

U

F: TAATTTTAGGTTAGAGGGTTATTGT

R: CACAACCAATCAACAACACA

55

CDH13

M

F: TCGCGGGGTTCGTTTTTCGC

R: GACGTTTTCATTCATACACGCG

57

U

F: TTGTGGGGTTTGTTTTTTGT

R: ACATTTTCATTCATACACACA

53

MAGI2

M

F: CGTAGAGTTCGAGATGTGGTATTAGGC

R: AAACTCCTATACGAAAAAAACGCGCTA

60

U

F: TGTAGAGTTTGAGATGTGGTATTAGGT

R: AACTCCTATACAAAAAAAACACACTA

55

MGMT

M

F: TTTCGACGTTCGTAGGTTTTCGC

R: GCACTCTTCCGAAAACGAAACG

59

U

F: TTTGTGTTTTGATGTTTGTAGGTTTTTGT

R: AACTCCACACTCTTCCAAAAACAAAACA

59

MYOD1

M

F: GACGGTTTTCGACGGTTT

R: GCCCGAAACCGAATACAC

56

U

F: ATTTGATGGTTTTTGATGGTTT

R: CACACACATACTCATCCTCACA

57

RASSF1A

M

F: GTGTTAACGCGTTGCGTATC

R: AACCCCGCGAACTAAAAACGA

65

U

F: TTTGGTTGGAGTGTGTTAATGTG

R: CAAACCCCACAAACTAAAAACAA

60

SOX17

M

F: GGAGATTCGCGTAGT TTTCG

R: AACCCGACCATCACCGCG

60

U

F: GGAGATTTGTGTAGT TTTTG

R: ACCCAACCATCACCACA

55

GAPDH

M

F: GAGAAAGTAGGGTTCGGTTATTAGC

R: AAAAACGAAACGAAAAACTACGA

55

OXT

M

F: ATAAAAAGGTTAGGTCGGAGAGATC

R: AAATATAACAAACGAAAATCAACGC

52

  1. M, methylated; U, unmethylated; F, forward; R, reverse