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Table 2 Overlapping of genes containing significantly accessible promoter regions that correlated with upregulated gene expression

From: Chromatin accessibility analysis identifies GSTM1 as a prognostic marker in human glioblastoma patients

Gene_ID

Gene_type

Gene_name

log2FC (ATAC)

P value (ATAC)

log2FC (RNA)

P value (RNA)

P value (TCGA)

Hazard-ratio (TCGA)

ENSG00000134184

protein_coding

GSTM1

6.44

0.0001*

8.02

0.0393*

0.022*

1.8

ENSG00000137699

protein_coding

TRIM29

2.32

0.0019*

2.33

0.2541

0.28

1.3

ENSG00000144681

protein_coding

STAC

1.68

0.0004*

2.91

0.0353*

0.41

1.2

ENSG00000168505

protein_coding

GBX2

1.77

0.0094*

4.57

0.0136*

0.11

0.67

ENSG00000174226

protein_coding

SNX31

1.57

0.0067*

1.13

0.3342

0.24

0.74

ENSG00000225511

pseudogene

LINC00475

2.63

0.0015*

4.6

0.0912

0.038*

1.7

ENSG00000231419

lncRNA

LINC00689

2.09

0.0020*

4.48

0.0956

0.16

0.7

ENSG00000242512

lncRNA

LINC01206

1.7

0.0125*

5.8

0.0287*

0.56

0.86

ENSG00000260910

lncRNA

LINC00565

2.25

0.0168*

1.59

0.3653

0.091

1.5

ENSG00000275830

lncRNA

AL390755.1

3.52

0.0001*

4.38

0.0118*

0.89

0.96

ENSG00000287575

lncRNA

AL390755.3

2.56

0.0022*

3.55

0.0160*

NA

NA

  1. The asterisk (*) indicated statistical significance (P < 0.05) between experimental and control group
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Clinical Epigenetics

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