Skip to main content

Table 2 Overlapping of genes containing significantly accessible promoter regions that correlated with upregulated gene expression

From: Chromatin accessibility analysis identifies GSTM1 as a prognostic marker in human glioblastoma patients

Gene_ID Gene_type Gene_name log2FC (ATAC) P value (ATAC) log2FC (RNA) P value (RNA) P value (TCGA) Hazard-ratio (TCGA)
ENSG00000134184 protein_coding GSTM1 6.44 0.0001* 8.02 0.0393* 0.022* 1.8
ENSG00000137699 protein_coding TRIM29 2.32 0.0019* 2.33 0.2541 0.28 1.3
ENSG00000144681 protein_coding STAC 1.68 0.0004* 2.91 0.0353* 0.41 1.2
ENSG00000168505 protein_coding GBX2 1.77 0.0094* 4.57 0.0136* 0.11 0.67
ENSG00000174226 protein_coding SNX31 1.57 0.0067* 1.13 0.3342 0.24 0.74
ENSG00000225511 pseudogene LINC00475 2.63 0.0015* 4.6 0.0912 0.038* 1.7
ENSG00000231419 lncRNA LINC00689 2.09 0.0020* 4.48 0.0956 0.16 0.7
ENSG00000242512 lncRNA LINC01206 1.7 0.0125* 5.8 0.0287* 0.56 0.86
ENSG00000260910 lncRNA LINC00565 2.25 0.0168* 1.59 0.3653 0.091 1.5
ENSG00000275830 lncRNA AL390755.1 3.52 0.0001* 4.38 0.0118* 0.89 0.96
ENSG00000287575 lncRNA AL390755.3 2.56 0.0022* 3.55 0.0160* NA NA
  1. The asterisk (*) indicated statistical significance (P < 0.05) between experimental and control group