Skip to main content

Table 4 Annotations of highlighted CpG sites (|z|> 2) of methylation ICs 1–5

From: DNA methylation under the major depression pathway predicts pediatric quality of life four-month post-pediatric mild traumatic brain injury

IC

CpG sites

Chr

BP Pos

Z value

Relation to Island

RefGene name (UCSC)

IC 1

cg19097407

chr9

36154750

14.42

OpenSea

GLIPR2

IC 2

cg19519355

chr8

26697488

12.53

OpenSea

ADRA1A

cg10492858

chr21

35884679

2.43

OpenSea

KCNE1

cg06279296

chr10

601816

− 2.48

OpenSea

DIP2C

cg21163960

chr11

35441777

− 2.12

Island

SLC1A2

cg22186155

chr8

72765158

− 2.02

OpenSea

MSC-AS1

IC 3

cg08549495

chr16

8823986

12.55

OpenSea

ABAT

cg00549601

chr12

52208872

4.42

Island

 

IC 4

cg03944460

chr4

3765186

12.82

N_Shore

 

cg27297376

chr7

98627840

2.70

OpenSea

SMURF1

cg06279296

chr10

601816

− 2.64

OpenSea

DIP2C

IC 5

cg04306507

chr14

55594613

12.62

N_Shore

LGALS3

cg09422301

chr6

24494043

− 3.37

N_Shore

ALDH5A1

  1. ‘Chr’ and ‘BP Pos’ represent chromosome number and base pair position, respectively. ‘RefGene Name (UCSC)’ denotes reference gene name from University of California, Santa Cruz (UCSC) genome browser