TY - JOUR AU - Paska, A. V. AU - Hudler, P. PY - 2015 DA - 2015// TI - Aberrant methylation patterns in cancer: a clinical view JO - Biochem Med VL - 25 UR - https://doi.org/10.11613/BM.2015.017 DO - 10.11613/BM.2015.017 ID - Paska2015 ER - TY - JOUR AU - Barciszewska, A. M. AU - Giel-Pietraszuk, M. AU - Perrigue, P. M. AU - Naskręt-Barciszewska, M. PY - 2019 DA - 2019// TI - Total DNA methylation changes reflect random oxidative DNA damage in gliomas JO - Cells VL - 8 UR - https://doi.org/10.3390/cells8091065 DO - 10.3390/cells8091065 ID - Barciszewska2019 ER - TY - JOUR AU - Gopisetty, G. AU - Ramachandran, K. AU - Singal, R. PY - 2006 DA - 2006// TI - DNA methylation and apoptosis JO - Mol Immunol VL - 43 UR - https://doi.org/10.1016/j.molimm.2005.11.010 DO - 10.1016/j.molimm.2005.11.010 ID - Gopisetty2006 ER - TY - JOUR AU - Esteller, M. PY - 2008 DA - 2008// TI - Epigenetics in cancer JO - N Engl J Med VL - 358 UR - https://doi.org/10.1056/NEJMra072067 DO - 10.1056/NEJMra072067 ID - Esteller2008 ER - TY - JOUR AU - Laird, P. W. PY - 2003 DA - 2003// TI - The power and the promise of DNA methylation markers JO - Nat Rev Cancer VL - 3 UR - https://doi.org/10.1038/nrc1045 DO - 10.1038/nrc1045 ID - Laird2003 ER - TY - JOUR AU - Koch, A. AU - Joosten, S. C. AU - Feng, Z. AU - Ruijter, T. C. AU - Draht, M. X. AU - Melotte, V. PY - 2018 DA - 2018// TI - Analysis of DNA methylation in cancer: location revisited JO - Nat Rev Clin Oncol VL - 15 UR - https://doi.org/10.1038/s41571-018-0004-4 DO - 10.1038/s41571-018-0004-4 ID - Koch2018 ER - TY - BOOK AU - Swerdlow, S. H. PY - 2008 DA - 2008// TI - WHO classification of tumours of haematopoietic and lymphoid tissues PB - International Agency for Research on Cancer CY - Lyon ID - Swerdlow2008 ER - TY - STD TI - Leukemia and Lymphoma Society. Facts and statistics. https://www.lls.org/facts-and-statistics/facts-and-statistics-overview/facts-and-statistics. Accessed 8 Jan 2021. UR - https://www.lls.org/facts-and-statistics/facts-and-statistics-overview/facts-and-statistics ID - ref8 ER - TY - JOUR AU - Roman-Gomez, J. AU - Jimenez-Velasco, A. AU - Agirre, X. AU - Castillejo, J. A. AU - Navarro, G. AU - Garate, L. PY - 2006 DA - 2006// TI - Promoter hypermethylation and global hypomethylation are independent epigenetic events in lymphoid leukemogenesis with opposing effects on clinical outcome JO - Leukemia VL - 20 UR - https://doi.org/10.1038/sj.leu.2404257 DO - 10.1038/sj.leu.2404257 ID - Roman-Gomez2006 ER - TY - JOUR AU - Zhang, L. Y. AU - Yuan, Y. Q. AU - Zhou, D. M. AU - Wang, Z. Y. AU - Ju, S. G. AU - Sun, Y. PY - 2016 DA - 2016// TI - Impact of global and gene-specific DNA methylation in de novo or relapsed acute myeloid leukemia patients treated with decitabine JO - Asian Pac J Cancer Prev VL - 17 UR - https://doi.org/10.7314/APJCP.2016.17.1.431 DO - 10.7314/APJCP.2016.17.1.431 ID - Zhang2016 ER - TY - JOUR AU - Deneberg, S. AU - Grövdal, M. AU - Karimi, M. AU - Jansson, M. AU - Nahi, H. AU - Corbacioglu, A. PY - 2010 DA - 2010// TI - Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia JO - Leukemia VL - 24 UR - https://doi.org/10.1038/leu.2010.41 DO - 10.1038/leu.2010.41 ID - Deneberg2010 ER - TY - JOUR AU - Yang, X. AU - Wong, M. P. M. AU - Ng, R. K. PY - 2019 DA - 2019// TI - Aberrant DNA methylation in acute myeloid leukemia and its clinical implications JO - Int J Mol Sci VL - 20 UR - https://doi.org/10.3390/ijms20184576 DO - 10.3390/ijms20184576 ID - Yang2019 ER - TY - JOUR AU - Salhia, B. AU - Baker, A. AU - Ahmann, G. AU - Auclair, D. AU - Fonseca, R. AU - Carpten, J. D. PY - 2010 DA - 2010// TI - DNA methylation analysis determines the high frequency of genic hypomethylation and low frequency of hypermethylation events in plasma cell tumors JO - Cancer Res VL - 70 UR - https://doi.org/10.1158/0008-5472.CAN-10-0282 DO - 10.1158/0008-5472.CAN-10-0282 ID - Salhia2010 ER - TY - JOUR AU - Shaknovich, R. AU - Geng, H. AU - Johnson, N. A. AU - Tsikitas, L. AU - Cerchietti, L. AU - Greally, J. M. PY - 2010 DA - 2010// TI - DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma JO - Blood VL - 116 UR - https://doi.org/10.1182/blood-2010-05-285320 DO - 10.1182/blood-2010-05-285320 ID - Shaknovich2010 ER - TY - JOUR AU - Pei, L. AU - Choi, J. -. H. AU - Liu, J. AU - Lee, E. -. J. AU - McCarthy, B. AU - Wilson, J. M. PY - 2012 DA - 2012// TI - Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia JO - Epigenetics VL - 7 UR - https://doi.org/10.4161/epi.20237 DO - 10.4161/epi.20237 ID - Pei2012 ER - TY - JOUR AU - Tejedor, J. R. AU - Bueno, C. AU - Cobo, I. AU - Bayón, G. F. AU - Prieto, C. AU - Mangas, C. PY - 2018 DA - 2018// TI - Epigenome-wide analysis reveals specific DNA hypermethylation of T cells during human hematopoietic differentiation JO - Epigenomics VL - 10 UR - https://doi.org/10.2217/epi-2017-0163 DO - 10.2217/epi-2017-0163 ID - Tejedor2018 ER - TY - JOUR AU - Dawber, T. R. AU - Meadors, G. F. AU - Moore, F. E. PY - 1951 DA - 1951// TI - Epidemiological approaches to heart disease: the Framingham Study JO - Am J Public Health VL - 41 UR - https://doi.org/10.2105/AJPH.41.3.279 DO - 10.2105/AJPH.41.3.279 ID - Dawber1951 ER - TY - JOUR AU - Lee, E. T. AU - Welty, T. K. AU - Fabsitz, R. AU - Cowan, L. D. AU - Le, N. A. AU - Oopik, A. J. PY - 1990 DA - 1990// TI - The Strong Heart Study. A study of cardiovascular disease in American Indians: design and methods JO - Am J Epidemiol VL - 132 UR - https://doi.org/10.1093/oxfordjournals.aje.a115757 DO - 10.1093/oxfordjournals.aje.a115757 ID - Lee1990 ER - TY - JOUR AU - Domingo-Relloso, A. AU - Riffo-Campos, A. L. AU - Haack, K. AU - Rentero-Garrido, P. AU - Ladd-Acosta, C. AU - Fallin, D. M. PY - 2020 DA - 2020// TI - Cadmium, smoking, and human blood DNA methylation profiles in adults from the strong heart study JO - Environ Health Perspect VL - 128 UR - https://doi.org/10.1289/EHP6345 DO - 10.1289/EHP6345 ID - Domingo-Relloso2020 ER - TY - JOUR AU - Fortin, J. -. P. AU - Triche, T. J. AU - Hansen, K. D. AU - Hansen, K. D. PY - 2017 DA - 2017// TI - Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi JO - Bioinformatics VL - 33 ID - Fortin2017 ER - TY - JOUR AU - Kreger, B. E. AU - Splansky, G. L. AU - Schatzkin, A. PY - 1991 DA - 1991// TI - The cancer experience In the Framingham Heart Study cohort JO - Cancer VL - 67 UR - https://doi.org/3.0.CO;2-W DO - 3.0.CO;2-W ID - Kreger1991 ER - TY - JOUR AU - Houseman, E. A. AU - Accomando, W. P. AU - Koestler, D. C. AU - Christensen, B. C. AU - Marsit, C. J. AU - Nelson, H. H. PY - 2012 DA - 2012// TI - DNA methylation arrays as surrogate measures of cell mixture distribution JO - BMC Bioinform VL - 13 UR - https://doi.org/10.1186/1471-2105-13-86 DO - 10.1186/1471-2105-13-86 ID - Houseman2012 ER - TY - STD TI - Friedman J, Hastie T, Tibshirani R, Narasimhan B, Simon N, Qian J, et al. Package “glmnet”. CRAN repository. 2020. ID - ref23 ER - TY - JOUR AU - Benton, M. C. AU - Sutherland, H. G. AU - Macartney-Coxson, D. AU - Haupt, L. M. AU - Lea, R. A. AU - Griffiths, L. R. PY - 2017 DA - 2017// TI - Methylome-wide association study of whole blood DNA in the Norfolk Island isolate identifies robust loci associated with age JO - Aging (Albany NY) VL - 9 UR - https://doi.org/10.18632/aging.101187 DO - 10.18632/aging.101187 ID - Benton2017 ER - TY - JOUR AU - Abraham, G. AU - Kowalczyk, A. AU - Zobel, J. AU - Inouye, M. PY - 2012 DA - 2012// TI - SparSNP: fast and memory-efficient analysis of all SNPs for phenotype prediction JO - BMC Bioinform VL - 13 UR - https://doi.org/10.1186/1471-2105-13-88 DO - 10.1186/1471-2105-13-88 ID - Abraham2012 ER - TY - JOUR AU - Waldmann, P. AU - Mészáros, G. AU - Gredler, B. AU - Fuerst, C. AU - Sölkner, J. PY - 2013 DA - 2013// TI - Evaluation of the lasso and the elastic net in genome-wide association studies JO - Front Genet UR - https://doi.org/10.3389/fgene.2013.00270/abstract DO - 10.3389/fgene.2013.00270/abstract ID - Waldmann2013 ER - TY - JOUR AU - Barfield, R. T. AU - Almli, L. M. AU - Kilaru, V. AU - Smith, A. K. AU - Mercer, K. B. AU - Duncan, R. PY - 2014 DA - 2014// TI - Accounting for population stratification in DNA methylation studies JO - Genet Epidemiol VL - 38 UR - https://doi.org/10.1002/gepi.21789 DO - 10.1002/gepi.21789 ID - Barfield2014 ER - TY - JOUR AU - Szklarczyk, D. AU - Gable, A. L. AU - Lyon, D. AU - Junge, A. AU - Wyder, S. AU - Huerta-Cepas, J. PY - 2019 DA - 2019// TI - STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets JO - Nucleic Acids Res VL - 47 UR - https://doi.org/10.1093/nar/gky1131 DO - 10.1093/nar/gky1131 ID - Szklarczyk2019 ER - TY - JOUR AU - Shannon, P. AU - Markiel, A. AU - Ozier, O. AU - Baliga, N. S. AU - Wang, J. T. AU - Ramage, D. PY - 2003 DA - 2003// TI - Cytoscape: a software environment for integrated models of biomolecular interaction networks JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1239303 DO - 10.1101/gr.1239303 ID - Shannon2003 ER - TY - JOUR AU - Teschendorff, A. E. AU - Relton, C. L. PY - 2017 DA - 2017// TI - Statistical and integrative system-level analysis of DNA methylation data JO - Nat Rev Genet VL - 19 UR - https://doi.org/10.1038/nrg.2017.86 DO - 10.1038/nrg.2017.86 ID - Teschendorff2017 ER - TY - JOUR AU - Schlosberg, C. E. AU - VanderKraats, N. D. AU - Edwards, J. R. PY - 2017 DA - 2017// TI - Modeling complex patterns of differential DNA methylation that associate with gene expression changes JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkx078 DO - 10.1093/nar/gkx078 ID - Schlosberg2017 ER - TY - JOUR AU - VanderKraats, N. D. AU - Hiken, J. F. AU - Decker, K. F. AU - Edwards, J. R. PY - 2013 DA - 2013// TI - Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt482 DO - 10.1093/nar/gkt482 ID - VanderKraats2013 ER - TY - JOUR AU - Heard, N. A. PY - 2017 DA - 2017// TI - Choosing between methods of combining p-values JO - Biometrika VL - 105 UR - https://doi.org/10.1093/biomet/asx076 DO - 10.1093/biomet/asx076 ID - Heard2017 ER - TY - JOUR AU - Smyth, G. K. PY - 2004 DA - 2004// TI - Linear models and empirical bayes methods for assessing differential expression in microarray experiments JO - Stat Appl Genet Mol Biol VL - 3 UR - https://doi.org/10.2202/1544-6115.1027 DO - 10.2202/1544-6115.1027 ID - Smyth2004 ER - TY - JOUR AU - Chen, S. -. Y. AU - Feng, Z. AU - Yi, X. PY - 2017 DA - 2017// TI - A general introduction to adjustment for multiple comparisons JO - J Thorac Dis VL - 9 UR - https://doi.org/10.21037/jtd.2017.05.34 DO - 10.21037/jtd.2017.05.34 ID - Chen2017 ER - TY - JOUR AU - Hannum, G. AU - Guinney, J. AU - Zhao, L. AU - Zhang, L. AU - Hughes, G. AU - Sadda, S. V. PY - 2013 DA - 2013// TI - Genome-wide methylation profiles reveal quantitative views of human aging rates JO - Mol Cell VL - 49 UR - https://doi.org/10.1016/j.molcel.2012.10.016 DO - 10.1016/j.molcel.2012.10.016 ID - Hannum2013 ER - TY - JOUR AU - Horvath, S. PY - 2013 DA - 2013// TI - DNA methylation age of human tissues and cell types JO - Genome Biol VL - 14 UR - https://doi.org/10.1186/gb-2013-14-10-r115 DO - 10.1186/gb-2013-14-10-r115 ID - Horvath2013 ER - TY - JOUR AU - Levine, M. E. AU - Lu, A. T. AU - Quach, A. AU - Chen, B. H. AU - Assimes, T. L. AU - Bandinelli, S. PY - 2018 DA - 2018// TI - An epigenetic biomarker of aging for lifespan and healthspan JO - Aging (Albany NY) VL - 10 UR - https://doi.org/10.18632/aging.101414 DO - 10.18632/aging.101414 ID - Levine2018 ER - TY - JOUR AU - Husquin, L. T. AU - Rotival, M. AU - Fagny, M. AU - Quach, H. AU - Zidane, N. AU - McEwen, L. M. PY - 2018 DA - 2018// TI - Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation 06 biological sciences 0604 genetics JO - Genome Biol VL - 19 UR - https://doi.org/10.1186/s13059-018-1601-3 DO - 10.1186/s13059-018-1601-3 ID - Husquin2018 ER - TY - STD TI - Tj P, Mj B. The DMRcate package user’s guide. 2019. https://www.bioconductor.org/packages/release/bioc/vignettes/DMRcate/inst/doc/DMRcate.pdf. UR - https://www.bioconductor.org/packages/release/bioc/vignettes/DMRcate/inst/doc/DMRcate.pdf ID - ref40 ER - TY - JOUR AU - Makiyama, K. AU - Hamada, J. I. AU - Takada, M. AU - Murakawa, K. AU - Takahashi, Y. AU - Tada, M. PY - 2005 DA - 2005// TI - Aberrant expression of HOX genes in human invasive breast carcinoma JO - Oncol Rep VL - 13 ID - Makiyama2005 ER - TY - JOUR AU - Mustafa, M. AU - Lee, J. Y. AU - Kim, M. H. PY - 2015 DA - 2015// TI - CTCF negatively regulates HOXA10 expression in breast cancer cells JO - Biochem Biophys Res Commun VL - 467 UR - https://doi.org/10.1016/j.bbrc.2015.10.058 DO - 10.1016/j.bbrc.2015.10.058 ID - Mustafa2015 ER - TY - JOUR AU - Hur, H. AU - Lee, J. Y. AU - Yun, H. J. AU - Park, B. W. AU - Kim, M. H. PY - 2014 DA - 2014// TI - Analysis of HOX gene expression patterns in human breast cancer JO - Mol Biotechnol VL - 56 UR - https://doi.org/10.1007/s12033-013-9682-4 DO - 10.1007/s12033-013-9682-4 ID - Hur2014 ER - TY - JOUR AU - Carrera, M. AU - Bitu, C. C. AU - Oliveira, C. E. AU - Cervigne, N. K. AU - Graner, E. AU - Manninen, A. PY - 2015 DA - 2015// TI - HOXA10 controls proliferation, migration and invasion in oral squamous cell carcinoma JO - Int J Clin Exp Pathol VL - 8 ID - Carrera2015 ER - TY - JOUR AU - Bhatlekar, S. AU - Fields, J. Z. AU - Boman, B. M. PY - 2014 DA - 2014// TI - HOX genes and their role in the development of human cancers JO - J Mol Med VL - 92 UR - https://doi.org/10.1007/s00109-014-1181-y DO - 10.1007/s00109-014-1181-y ID - Bhatlekar2014 ER - TY - JOUR AU - Pandey, S. AU - Moazam, M. AU - Eisermann, K. AU - Hord, J. AU - Fraizer, G. AU - Kuerbitz, S. J. PY - 2011 DA - 2011// TI - The importance of WT1 in leukemia JO - Blood VL - 118 UR - https://doi.org/10.1182/blood.V118.21.4645.4645 DO - 10.1182/blood.V118.21.4645.4645 ID - Pandey2011 ER - TY - JOUR AU - Inoue, K. AU - Sugiyama, H. AU - Ogawa, H. AU - Nakagawa, M. AU - Yamagami, T. AU - Miwa, H. PY - 1994 DA - 1994// TI - WT1 as a new prognostic factor and a new marker for the detection of minimal residual disease in acute leukemia JO - Blood VL - 84 UR - https://doi.org/10.1182/blood.V84.9.3071.3071 DO - 10.1182/blood.V84.9.3071.3071 ID - Inoue1994 ER - TY - JOUR AU - Teschendorff, A. E. AU - Gao, Y. AU - Jones, A. AU - Ruebner, M. AU - Beckmann, M. W. AU - Wachter, D. L. PY - 2016 DA - 2016// TI - DNA methylation outliers in normal breast tissue identify field defects that are enriched in cancer JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms10478 DO - 10.1038/ncomms10478 ID - Teschendorff2016 ER - TY - JOUR AU - Teschendorff, A. E. AU - Jones, A. AU - Fiegl, H. AU - Sargent, A. AU - Zhuang, J. J. AU - Kitchener, H. C. PY - 2012 DA - 2012// TI - Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation JO - Genome Med VL - 4 UR - https://doi.org/10.1186/gm323 DO - 10.1186/gm323 ID - Teschendorff2012 ER - TY - JOUR AU - Froehlich, J. AU - Versapuech, M. AU - Megrelis, L. AU - Largeteau, Q. AU - Meunier, S. AU - Tanchot, C. PY - 2016 DA - 2016// TI - FAM65B controls the proliferation of transformed and primary T cells JO - Oncotarget VL - 7 UR - https://doi.org/10.18632/oncotarget.11438 DO - 10.18632/oncotarget.11438 ID - Froehlich2016 ER - TY - JOUR AU - Xiong, Z. AU - Li, M. AU - Yang, F. AU - Ma, Y. AU - Sang, J. AU - Li, R. PY - 2019 DA - 2019// TI - EWAS Data Hub: a resource of DNA methylation array data and metadata JO - Nucleic Acids Res VL - 48 UR - https://doi.org/10.1093/nar/gkz840 DO - 10.1093/nar/gkz840 ID - Xiong2019 ER - TY - JOUR AU - Davick, J. J. AU - Kim, J. AU - Wick, M. R. AU - Gru, A. A. PY - 2018 DA - 2018// TI - Indeterminate dendritic cell tumor: a report of two new cases lacking the ETV3-NCOA2 translocation and a literature review JO - Am J Dermatopathol VL - 40 UR - https://doi.org/10.1097/DAD.0000000000001191 DO - 10.1097/DAD.0000000000001191 ID - Davick2018 ER - TY - JOUR AU - Zhou, H. AU - Luo, Y. AU - Huang, S. PY - 2012 DA - 2012// TI - Updates of mTOR Inhibitors JO - Anticancer Agents Med Chem VL - 10 UR - https://doi.org/10.2174/187152010793498663 DO - 10.2174/187152010793498663 ID - Zhou2012 ER - TY - JOUR AU - Hua, H. AU - Kong, Q. AU - Zhang, H. AU - Wang, J. AU - Luo, T. AU - Jiang, Y. PY - 2019 DA - 2019// TI - Targeting mTOR for cancer therapy JO - J Hematol Oncol VL - 12 UR - https://doi.org/10.1186/s13045-019-0754-1 DO - 10.1186/s13045-019-0754-1 ID - Hua2019 ER - TY - JOUR AU - Xing, W. AU - Xiao, Y. AU - Lu, X. AU - Zhu, H. AU - He, X. AU - Huang, W. PY - 2017 DA - 2017// TI - GFI1 downregulation promotes inflammation-linked metastasis of colorectal cancer JO - Cell Death Differ VL - 24 UR - https://doi.org/10.1038/cdd.2017.50 DO - 10.1038/cdd.2017.50 ID - Xing2017 ER - TY - JOUR AU - Bolós, V. AU - Grego-Bessa, J. AU - Pompa, J. L. PY - 2007 DA - 2007// TI - Notch signaling in development and cancer JO - Endocr Rev VL - 28 UR - https://doi.org/10.1210/er.2006-0046 DO - 10.1210/er.2006-0046 ID - Bolós2007 ER - TY - STD TI - Lentjes MHFM, Niessen HEC, Akiyama Y, Bruïne DAP, Melotte V, Engeland MVAN. The emerging role of GATA transcription factors in development and disease. Expert Rev Mol Med. 2016;18:e3. ID - ref57 ER - TY - JOUR AU - Kresovich, J. K. AU - Joyce, B. T. AU - Gao, T. AU - Zheng, Y. AU - Zhang, Z. AU - Achenbach, C. J. PY - 2018 DA - 2018// TI - Promoter methylation of PGC1A and PGC1B predicts cancer incidence in a veteran cohort JO - Epigenomics VL - 10 UR - https://doi.org/10.2217/epi-2017-0141 DO - 10.2217/epi-2017-0141 ID - Kresovich2018 ER - TY - JOUR AU - Corrigan, D. J. AU - Luchsinger, L. L. AU - Almeida, M. J. AU - Williams, L. J. AU - Strikoudis, A. AU - Snoeck, H. W. PY - 2018 DA - 2018// TI - PRDM16 isoforms differentially regulate normal and leukemic hematopoiesis and inflammatory gene signature JO - J Clin Investig VL - 128 UR - https://doi.org/10.1172/JCI99862 DO - 10.1172/JCI99862 ID - Corrigan2018 ER - TY - JOUR AU - Hattab, M. W. AU - Clark, S. L. AU - Oord, E. J. C. G. PY - 2018 DA - 2018// TI - Overestimation of the classification accuracy of a biomarker for assessing heavy alcohol use JO - Mol Psychiatry VL - 23 UR - https://doi.org/10.1038/mp.2017.181 DO - 10.1038/mp.2017.181 ID - Hattab2018 ER -