TY - JOUR AU - Blanchard-Rohner, G. AU - Pollard, A. J. PY - 2011 DA - 2011// TI - Long-term protection after immunization with protein–polysaccharide conjugate vaccines in infancy JO - Expert Rev Vaccines VL - 10 UR - https://doi.org/10.1586/erv.11.14 DO - 10.1586/erv.11.14 ID - Blanchard-Rohner2011 ER - TY - JOUR AU - O'Brien, K. L. AU - Wolfson, L. J. AU - Watt, J. P. AU - Henkle, E. AU - Deloria-Knoll, M. AU - McCall, N. PY - 2009 DA - 2009// TI - Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates JO - The Lancet VL - 374 UR - https://doi.org/10.1016/S0140-6736(09)61204-6 DO - 10.1016/S0140-6736(09)61204-6 ID - O'Brien2009 ER - TY - JOUR PY - 2007 DA - 2007// TI - Pneumococcal conjugate vaccine for childhood immunization—WHO position paper JO - Wkly Epidemiol Rec VL - 82 ID - ref3 ER - TY - JOUR AU - Kollmann, T. R. AU - Kampmann, B. AU - Mazmanian, S. K. AU - Marchant, A. AU - Levy, O. PY - 2017 DA - 2017// TI - Protecting the newborn and young infant from infectious diseases: lessons from immune ontogeny JO - Immunity VL - 46 UR - https://doi.org/10.1016/j.immuni.2017.03.009 DO - 10.1016/j.immuni.2017.03.009 ID - Kollmann2017 ER - TY - JOUR AU - Westerink, M. J. AU - Schroeder, H. W. AU - Nahm, M. H. PY - 2012 DA - 2012// TI - Immune responses to pneumococcal vaccines in children and adults: rationale for age-specific vaccination JO - Aging Dis VL - 3 ID - Westerink2012 ER - TY - JOUR AU - Lipsitch, M. AU - Li, L. M. AU - Patterson, S. AU - Trammel, J. AU - Juergens, C. AU - Gruber, W. C. PY - 2018 DA - 2018// TI - Serotype-specific immune responses to pneumococcal conjugate vaccine among children are significantly correlated by individual: analysis of randomized controlled trial data JO - Vaccine VL - 36 UR - https://doi.org/10.1016/j.vaccine.2017.12.015 DO - 10.1016/j.vaccine.2017.12.015 ID - Lipsitch2018 ER - TY - JOUR AU - Mentzer, A. J. AU - O’Connor, D. AU - Pollard, A. J. AU - Hill, A. V. PY - 2015 DA - 2015// TI - Searching for the human genetic factors standing in the way of universally effective vaccines JO - Philos Trans R Soc Lond B Biol Sci VL - 370 UR - https://doi.org/10.1098/rstb.2014.0341 DO - 10.1098/rstb.2014.0341 ID - Mentzer2015 ER - TY - JOUR AU - O’Connor, D. AU - Png, E. AU - Khor, C. C. AU - Snape, M. D. AU - Hill, A. V. S. AU - Klis, F. PY - 2019 DA - 2019// TI - Common genetic variations associated with the persistence of immunity following childhood immunization JO - Cell Rep VL - 27 UR - https://doi.org/10.1016/j.celrep.2019.05.053 DO - 10.1016/j.celrep.2019.05.053 ID - O’Connor2019 ER - TY - JOUR AU - Jones, P. A. AU - Takai, D. PY - 2001 DA - 2001// TI - The role of DNA methylation in mammalian epigenetics JO - Science VL - 293 UR - https://doi.org/10.1126/science.1063852 DO - 10.1126/science.1063852 ID - Jones2001 ER - TY - JOUR AU - Bibikova, M. AU - Lin, Z. AU - Zhou, L. AU - Chudin, E. AU - Garcia, E. W. AU - Wu, B. PY - 2006 DA - 2006// TI - High-throughput DNA methylation profiling using universal bead arrays JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4410706 DO - 10.1101/gr.4410706 ID - Bibikova2006 ER - TY - JOUR AU - Perera, F. AU - Herbstman, J. PY - 2011 DA - 2011// TI - Prenatal environmental exposures, epigenetics, and disease JO - Reprod Toxicol VL - 31 UR - https://doi.org/10.1016/j.reprotox.2010.12.055 DO - 10.1016/j.reprotox.2010.12.055 ID - Perera2011 ER - TY - JOUR AU - Boks, M. P. AU - Derks, E. M. AU - Weisenberger, D. J. AU - Strengman, E. AU - Janson, E. AU - Sommer, I. E. PY - 2009 DA - 2009// TI - The relationship of DNA methylation with age, gender and genotype in twins and healthy controls JO - PLoS ONE VL - 4 UR - https://doi.org/10.1371/journal.pone.0006767 DO - 10.1371/journal.pone.0006767 ID - Boks2009 ER - TY - JOUR AU - Bell, C. G. AU - Lowe, R. AU - Adams, P. D. AU - Baccarelli, A. A. AU - Beck, S. AU - Bell, J. T. PY - 2019 DA - 2019// TI - DNA methylation aging clocks: challenges and recommendations JO - Genome Biol VL - 20 UR - https://doi.org/10.1186/s13059-019-1824-y DO - 10.1186/s13059-019-1824-y ID - Bell2019 ER - TY - JOUR AU - Boulias, K. AU - Lieberman, J. AU - Greer, E. L. PY - 2016 DA - 2016// TI - An epigenetic clock measures accelerated aging in treated HIV infection JO - Mol Cell VL - 62 UR - https://doi.org/10.1016/j.molcel.2016.04.008 DO - 10.1016/j.molcel.2016.04.008 ID - Boulias2016 ER - TY - JOUR AU - Horvath, S. AU - Garagnani, P. AU - Bacalini, M. G. AU - Pirazzini, C. AU - Salvioli, S. AU - Gentilini, D. PY - 2015 DA - 2015// TI - Accelerated epigenetic aging in down syndrome JO - Aging Cell VL - 14 UR - https://doi.org/10.1111/acel.12325 DO - 10.1111/acel.12325 ID - Horvath2015 ER - TY - JOUR AU - Fernandez-Morera, J. L. AU - Calvanese, V. AU - Rodriguez-Rodero, S. AU - Menendez-Torre, E. AU - Fraga, M. F. PY - 2010 DA - 2010// TI - Epigenetic regulation of the immune system in health and disease JO - Tissue Antigens VL - 76 UR - https://doi.org/10.1111/j.1399-0039.2010.01587.x DO - 10.1111/j.1399-0039.2010.01587.x ID - Fernandez-Morera2010 ER - TY - JOUR AU - Kondilis-Mangum, H. D. AU - Wade, P. A. PY - 2013 DA - 2013// TI - Epigenetics and the adaptive immune response JO - Mol Asp Med VL - 34 UR - https://doi.org/10.1016/j.mam.2012.06.008 DO - 10.1016/j.mam.2012.06.008 ID - Kondilis-Mangum2013 ER - TY - JOUR AU - Acevedo, N. AU - Reinius, L. E. AU - Vitezic, M. AU - Fortino, V. AU - Soderhall, C. AU - Honkanen, H. PY - 2015 DA - 2015// TI - Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes JO - Clin Epigenet VL - 7 UR - https://doi.org/10.1186/s13148-015-0064-6 DO - 10.1186/s13148-015-0064-6 ID - Acevedo2015 ER - TY - JOUR AU - Truck, J. AU - Jawad, S. AU - Goldblatt, D. AU - Roalfe, L. AU - Snape, M. D. AU - Voysey, M. PY - 2016 DA - 2016// TI - The antibody response following a booster with either a 10- or 13-valent pneumococcal conjugate vaccine in toddlers primed with a 13-valent pneumococcal conjugate vaccine in early infancy JO - Pediatr Infect Dis J VL - 35 UR - https://doi.org/10.1097/INF.0000000000001180 DO - 10.1097/INF.0000000000001180 ID - Truck2016 ER - TY - JOUR AU - Truck, J. AU - Kelly, S. AU - Jawad, S. AU - Snape, M. D. AU - Voysey, M. AU - Pollard, A. J. PY - 2018 DA - 2018// TI - Differences in immunization site pain in toddlers vaccinated with either the 10- or the 13-valent pneumococcal conjugate vaccine JO - Pediatr Infect Dis J VL - 37 UR - https://doi.org/10.1097/INF.0000000000001894 DO - 10.1097/INF.0000000000001894 ID - Truck2018 ER - TY - JOUR AU - Truck, J. AU - Snape, M. D. AU - Tatangeli, F. AU - Voysey, M. AU - Yu, L. M. AU - Faust, S. N. PY - 2014 DA - 2014// TI - Pneumococcal serotype-specific antibodies persist through early childhood after infant immunization: follow-up from a randomized controlled trial JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0091413 DO - 10.1371/journal.pone.0091413 ID - Truck2014 ER - TY - JOUR AU - Horvath, S. PY - 2013 DA - 2013// TI - DNA methylation age of human tissues and cell types JO - Genome Biol VL - 14 UR - https://doi.org/10.1186/gb-2013-14-10-r115 DO - 10.1186/gb-2013-14-10-r115 ID - Horvath2013 ER - TY - JOUR AU - Arechederra, M. AU - Daian, F. AU - Yim, A. AU - Bazai, S. K. AU - Richelme, S. AU - Dono, R. PY - 2018 DA - 2018// TI - Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-05550-5 DO - 10.1038/s41467-018-05550-5 ID - Arechederra2018 ER - TY - JOUR AU - Ladd-Acosta, C. AU - Hansen, K. D. AU - Briem, E. AU - Fallin, M. D. AU - Kaufmann, W. E. AU - Feinberg, A. P. PY - 2014 DA - 2014// TI - Common DNA methylation alterations in multiple brain regions in autism JO - Mol Psych VL - 19 UR - https://doi.org/10.1038/mp.2013.114 DO - 10.1038/mp.2013.114 ID - Ladd-Acosta2014 ER - TY - JOUR AU - Maschietto, M. AU - Rodrigues, T. C. AU - Kashiwabara, A. Y. AU - Araujo, É. S. S. AU - Aguiar, T. F. M. AU - Costa, C. M. L. PY - 2017 DA - 2017// TI - DNA methylation landscape of hepatoblastomas reveals arrest at early stages of liver differentiation and cancer-related alterations JO - Oncotarget VL - 8 UR - https://doi.org/10.18632/oncotarget.14208 DO - 10.18632/oncotarget.14208 ID - Maschietto2017 ER - TY - JOUR AU - Henry, C. J. AU - Ornelles, D. A. AU - Mitchell, L. M. AU - Brzoza-Lewis, K. L. AU - Hiltbold, E. M. PY - 2008 DA - 2008// TI - IL-12 produced by dendritic cells augments CD8+ T cell activation through the production of the chemokines CCL1 and CCL17 JO - J Immunol VL - 181 UR - https://doi.org/10.4049/jimmunol.181.12.8576 DO - 10.4049/jimmunol.181.12.8576 ID - Henry2008 ER - TY - JOUR AU - Martinez, G. J. AU - Zhang, Z. AU - Chung, Y. AU - Reynolds, J. M. AU - Lin, X. AU - Jetten, A. M. PY - 2009 DA - 2009// TI - Smad3 differentially regulates the induction of regulatory and inflammatory T cell differentiation JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.C109.078238 DO - 10.1074/jbc.C109.078238 ID - Martinez2009 ER - TY - JOUR AU - Scharschmidt, E. AU - Wegener, E. AU - Heissmeyer, V. AU - Rao, A. AU - Krappmann, D. PY - 2004 DA - 2004// TI - Degradation of Bcl10 induced by T-cell activation negatively regulates NF-κB signaling JO - Mol Cell Biol VL - 24 UR - https://doi.org/10.1128/MCB.24.9.3860-3873.2004 DO - 10.1128/MCB.24.9.3860-3873.2004 ID - Scharschmidt2004 ER - TY - JOUR AU - DeVries, A. AU - Wlasiuk, G. AU - Miller, S. J. AU - Bosco, A. AU - Stern, D. A. AU - Lohman, I. C. PY - 2017 DA - 2017// TI - Epigenome-wide analysis links SMAD3 methylation at birth to asthma in children of asthmatic mothers JO - J Allergy Clin Immunol VL - 140 UR - https://doi.org/10.1016/j.jaci.2016.10.041 DO - 10.1016/j.jaci.2016.10.041 ID - DeVries2017 ER - TY - JOUR AU - Kawai, T. AU - Akira, S. PY - 2011 DA - 2011// TI - Regulation of innate immune signalling pathways by the tripartite motif (TRIM) family proteins JO - EMBO Mol Med VL - 3 UR - https://doi.org/10.1002/emmm.201100160 DO - 10.1002/emmm.201100160 ID - Kawai2011 ER - TY - JOUR AU - Lunardi, A. AU - Gaboli, M. AU - Giorgio, M. AU - Rivi, R. AU - Bygrave, A. AU - Antoniou, M. PY - 2011 DA - 2011// TI - A role for PML in innate immunity JO - Genes Cancer VL - 2 UR - https://doi.org/10.1177/1947601911402682 DO - 10.1177/1947601911402682 ID - Lunardi2011 ER - TY - JOUR AU - Huang, C. T. AU - Workman, C. J. AU - Flies, D. AU - Pan, X. AU - Marson, A. L. AU - Zhou, G. PY - 2004 DA - 2004// TI - Role of LAG-3 in regulatory T cells JO - Immunity VL - 21 UR - https://doi.org/10.1016/j.immuni.2004.08.010 DO - 10.1016/j.immuni.2004.08.010 ID - Huang2004 ER - TY - JOUR AU - Ovsyannikova, I. G. AU - Pankratz, V. S. AU - Vierkant, R. A. AU - Pajewski, N. M. AU - Quinn, C. P. AU - Kaslow, R. A. PY - 2013 DA - 2013// TI - Human leukocyte antigens and cellular immune responses to anthrax vaccine adsorbed JO - Infect Immun VL - 81 UR - https://doi.org/10.1128/IAI.00269-13 DO - 10.1128/IAI.00269-13 ID - Ovsyannikova2013 ER - TY - JOUR AU - Lambert, N. D. AU - Haralambieva, I. H. AU - Kennedy, R. B. AU - Ovsyannikova, I. G. AU - Pankratz, V. S. AU - Poland, G. A. PY - 2015 DA - 2015// TI - Polymorphisms in HLA-DPB1 are associated with differences in rubella virus-specific humoral immunity after vaccination JO - J Infect Dis VL - 211 UR - https://doi.org/10.1093/infdis/jiu553 DO - 10.1093/infdis/jiu553 ID - Lambert2015 ER - TY - JOUR AU - Yao, Y. AU - Yang, H. AU - Shi, L. AU - Liu, S. AU - Li, C. AU - Chen, J. PY - 2019 DA - 2019// TI - HLA class II genes HLA-DRB1, HLA-DPB1, and HLA-DQB1 are associated with the antibody response to inactivated Japanese encephalitis vaccine JO - Front Immunol VL - 10 UR - https://doi.org/10.3389/fimmu.2019.00428 DO - 10.3389/fimmu.2019.00428 ID - Yao2019 ER - TY - JOUR AU - Dhiman, N. AU - Bonilla, R. G. AU - Jacobson, R. M. AU - O'Kane, D. AU - Poland, G. A. PY - 2003 DA - 2003// TI - Differential HLA gene expression in measles vaccine seropositive and seronegative subjects: a pilot study JO - Scand J Infect Dis VL - 35 UR - https://doi.org/10.1080/00365540310007105 DO - 10.1080/00365540310007105 ID - Dhiman2003 ER - TY - JOUR AU - Sandoval, J. AU - Heyn, H. AU - Moran, S. AU - Serra-Musach, J. AU - Pujana, M. A. AU - Bibikova, M. PY - 2011 DA - 2011// TI - Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome JO - Epigenetics VL - 6 UR - https://doi.org/10.4161/epi.6.6.16196 DO - 10.4161/epi.6.6.16196 ID - Sandoval2011 ER - TY - JOUR PY - 2012 DA - 2012// TI - An integrated encyclopedia of DNA elements in the human genome JO - Nature VL - 489 UR - https://doi.org/10.1038/nature11247 DO - 10.1038/nature11247 ID - ref38 ER - TY - JOUR AU - Jones, S. A. PY - 2005 DA - 2005// TI - Directing transition from innate to acquired immunity: defining a role for IL-6 JO - J Immunol VL - 175 UR - https://doi.org/10.4049/jimmunol.175.6.3463 DO - 10.4049/jimmunol.175.6.3463 ID - Jones2005 ER - TY - JOUR AU - Su, L. -. K. AU - Yu, F. AU - Li, Z. -. F. AU - Zeng, C. AU - Xu, Q. -. A. AU - Fan, M. -. W. PY - 2014 DA - 2014// TI - Intranasal co-delivery of IL-6 gene enhances the immunogenicity of anti-caries DNA vaccine JO - Acta Pharmacol Sin VL - 35 UR - https://doi.org/10.1038/aps.2013.184 DO - 10.1038/aps.2013.184 ID - Su2014 ER - TY - JOUR AU - Su, B. AU - Wang, J. AU - Wang, X. AU - Jin, H. AU - Zhao, G. AU - Ding, Z. PY - 2008 DA - 2008// TI - The effects of IL-6 and TNF-α as molecular adjuvants on immune responses to FMDV and maturation of dendritic cells by DNA vaccination JO - Vaccine VL - 26 UR - https://doi.org/10.1016/j.vaccine.2008.03.089 DO - 10.1016/j.vaccine.2008.03.089 ID - Su2008 ER - TY - JOUR AU - Kurtz, S. L. AU - Foreman, O. AU - Bosio, C. M. AU - Anver, M. R. AU - Elkins, K. L. PY - 2013 DA - 2013// TI - Interleukin-6 is essential for primary resistance to Francisella tularensis live vaccine strain infection JO - Infect Immun VL - 81 UR - https://doi.org/10.1128/IAI.01249-12 DO - 10.1128/IAI.01249-12 ID - Kurtz2013 ER - TY - JOUR AU - Velazquez-Salinas, L. AU - Verdugo-Rodriguez, A. AU - Rodriguez, L. L. AU - Borca, M. V. PY - 2019 DA - 2019// TI - The role of interleukin 6 during viral infections JO - Front Microbiol VL - 10 UR - https://doi.org/10.3389/fmicb.2019.01057 DO - 10.3389/fmicb.2019.01057 ID - Velazquez-Salinas2019 ER - TY - JOUR AU - Truck, J. AU - Mitchell, R. AU - Jawad, S. AU - Clutterbuck, E. A. AU - Snape, M. D. AU - Kelly, D. F. PY - 2017 DA - 2017// TI - Divergent memory B cell responses in a mixed infant pneumococcal conjugate vaccine schedule JO - Pediatr Infect Dis J VL - 36 UR - https://doi.org/10.1097/INF.0000000000001497 DO - 10.1097/INF.0000000000001497 ID - Truck2017 ER - TY - JOUR AU - Ziller, M. J. AU - Gu, H. AU - Muller, F. AU - Donaghey, J. AU - Tsai, L. T. AU - Kohlbacher, O. PY - 2013 DA - 2013// TI - Charting a dynamic DNA methylation landscape of the human genome JO - Nature VL - 500 UR - https://doi.org/10.1038/nature12433 DO - 10.1038/nature12433 ID - Ziller2013 ER - TY - JOUR AU - Houseman, E. A. AU - Accomando, W. P. AU - Koestler, D. C. AU - Christensen, B. C. AU - Marsit, C. J. AU - Nelson, H. H. PY - 2012 DA - 2012// TI - DNA methylation arrays as surrogate measures of cell mixture distribution JO - BMC Bioinform VL - 13 UR - https://doi.org/10.1186/1471-2105-13-86 DO - 10.1186/1471-2105-13-86 ID - Houseman2012 ER - TY - BOOK AU - Smyth, G. K. PY - 2005 DA - 2005// TI - Limma: linear models for microarray data. Bioinformatics and computational biology solutions using R and Bioconductor PB - Springer CY - New York UR - https://doi.org/10.1007/0-387-29362-0_23 DO - 10.1007/0-387-29362-0_23 ID - Smyth2005 ER - TY - JOUR AU - Du, P. AU - Zhang, X. AU - Huang, C. C. AU - Jafari, N. AU - Kibbe, W. A. AU - Hou, L. PY - 2010 DA - 2010// TI - Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis JO - BMC Bioinform VL - 11 UR - https://doi.org/10.1186/1471-2105-11-587 DO - 10.1186/1471-2105-11-587 ID - Du2010 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate: a practical and powerful approach to multiple testing JO - J R Stat Soc Ser B (Methodol) VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Ren, X. AU - Kuan, P. F. PY - 2019 DA - 2019// TI - methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing JO - Bioinformatics VL - 35 UR - https://doi.org/10.1093/bioinformatics/bty892 DO - 10.1093/bioinformatics/bty892 ID - Ren2019 ER -