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Table 4 Significant enrichment of GO terms in the top 500 sites from the Discovery Cohort EWAS of PTSD

From: An epigenome-wide association study of posttraumatic stress disorder in US veterans implicates several new DNA methylation loci

Term

Ont

N

DE

p

padj

Genes

GO:0032496: response to lipopolysaccharide

BP

322

19

6.97E − 06

0.042

PPARGC1A, CNR2, CPS1, TICAM1, ELANE, FGFR2, FOXP1, TICAM2, IL1B, MEF2C, ABCB4, PRKCE, ERBIN, HAMP, RARA, TFPI, VDR, CDC73, TNIP3

GO:0030374: ligand-dependent nuclear receptor transcription coactivator activity

MF

69

9

1.12E − 05

0.042

PPARGC1A, NCOA7, PPARG, PRKCB, RARA, RARB, RORA, VDR, MED12

GO:0002237:response to molecule of bacterial origin

BP

339

19

1.42E − 05

0.042

PPARGC1A, CNR2, CPS1, TICAM1, ELANE, FGFR2, FOXP1, TICAM2, IL1B, MEF2C, ABCB4, PRKCE, ERBIN, HAMP, RARA, TFPI, VDR, CDC73, TNIP3

GO:0071216: cellular response to biotic stimulus

BP

202

14

1.71E − 05

0.042

PPARGC1A, TICAM1, TICAM2, IL1B, MEF2C, ABCB4, PRKCE, HAMP, RARA, TFPI, VDR, WFS1, CDC73, TNIP3

GO:0003416: endochondral bone growth

BP

22

6

1.75E − 05

0.042

FGFR2, POC1A, MSX2, BNC2, RARA, RARB