From: DNA methylation mediates the effect of cocaine use on HIV severity
CpG | Chr | Position | Nearest gene | Cocaine EWA effect size | Cocaine EWA p value | VACS index EWA effect size | VACS index EWA p value | Reference gene group | Relations to CpG islands |
---|---|---|---|---|---|---|---|---|---|
cg22917487 | 3 | 39322103 | CX3CR1 | 1.71E−02 | 1.69E−07 | 1.96E−04 | 1.73E−03 | Body;TSS200;5UTR;TSS1500 |  |
cg07839457 | 16 | 57023022 | NLRC5 | − 5.18E−02 | 3.16E−05 | − 7.08E−04 | 4.02E−04 | TSS1500 | N_Shore |
cg26312951 | 21 | 42797847 | MX1 | − 3.93E−02 | 3.24E−05 | − 7.80E−04 | 2.50E−07 | TSS200;5UTR | N_Shore |
cg06188083 | 10 | 91093005 | IFIT3 | − 5.06E−02 | 3.34E−05 | − 9.96E−04 | 4.76E−08 | Body |  |
cg08122652 | 3 | 1.22E+08 | PARP9 | − 6.13E−02 | 1.10E−04 | − 1.26E−03 | 2.30E−10 | 5UTR;TSS1500 | N_Shore |
cg22385827 | 2 | 2.11E+08 | C2orf67 | 8.10E−03 | 2.01E−04 | 1.20E−04 | 7.52E−04 | TSS1500 | Island |
cg22930808 | 3 | 1.22E+08 | PARP9 | − 6.52E−02 | 2.44E−04 | − 1.17E−03 | 1.52E−06 | 5UTR;TSS1500 | N_Shore |
cg06981309 | 3 | 1.46E+08 | PLSCR1 | − 4.29E−02 | 2.63E−04 | − 5.72E−04 | 4.21E−04 | 5UTR | N_Shore |
cg03753191 | 13 | 43566902 | EPSTI1 | − 1.36E−02 | 2.81E−04 | − 2.44E−04 | 5.50E−05 | TSS1500 | S_Shore |
cg00096307 | 2 | 1.07E+08 | UXS1 | − 1.12E−02 | 3.59E−04 | 1.74E−04 | 5.73E−04 | Body |  |
cg26396492 | 20 | 19915762 | RIN2 | − 1.26E−02 | 4.76E−04 | − 2.00E−04 | 9.15E−04 | Body |  |
cg22940798 | 6 | 32805554 | TAP2 | − 1.93E−02 | 4.82E−04 | − 2.89E−04 | 4.72E−04 | Body | N_Shore |
cg08623256 | 5 | 3858275 |  | − 1.73E−02 | 6.96E−04 | 3.17E−04 | 7.18E−04 |  | S_Shelf |
cg08818207 | 6 | 32820355 | TAP1 | − 2.67E−02 | 8.18E−04 | − 6.18E−04 | 2.11E−07 | Body | N_Shore |
cg03038262 | 11 | 315262 | IFITM1 | − 2.98E−02 | 9.59E−04 | − 6.46E−04 | 7.65E−09 | 3UTR | N_Shore |