Fig. 4

Relationship between differential DNA methylation and gene expression. a Gene feature type for all differentially methylated probes and differently methylated probes associated with a gene that is differentially expressed. b CpG Density for all differentially methylated probes and differently methylated probes associated with a gene that is differentially expressed. c Distribution of CpG probe methylation difference in all differentially methylated probes (yellow) and differently methylated probes associated with a gene that is differentially expressed (pink). d Distribution of the number of CpG probes associated with all gene annotated, differentially methylated CpGs (Yellow) and of the number of differently methylated probes associated with a gene that is differentially expressed (pink). e Correlation of gene expression and associated probe averaged DNA methylation changes. f Correlation of gene expression with number of differentially methylated CpG probes associated with the gene