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Table 1 Summary of samples and analyses

From: Assessment of tumor suppressor promoter methylation in healthy individuals

Sample Input reads % reads post QC % reads mapped Reads (paired and clipped) % reads on target (primary) % reads on target (capture) Coverage on target (primary) Coverage on target (capture)
10046_S2 5043578 90.39 78.71 3588074 54.01 54.31 209.99 220.84
10071_S7 5167738 89.08 83.62 3849392 44.54 44.81 186.40 196.12
10077_S3 4622790 90.13 81.18 3382228 52.35 52.66 198.17 208.34
10078_S8 4148304 89.91 83.59 3117970 33.13 50.13 175.26 184.27
10081_S4 4408742 89.53 81.99 3236368 50.31 50.60 186.37 195.79
10082_S5 4146244 88.90 82.83 3053058 48.82 49.10 171.00 179.62
10086_S6 4665150 89.39 80.91 3373894 49.76 50.06 186.09 195.68
10088_S2 5683572 88.12 83.26 4169990 49.01 49.29 219.04 230.48
10097_S3 5372752 87.46 84.09 3951544 44.74 45.00 195.13 205.17
10107_S1 4659718 89.67 80.24 3352898 55.68 56.00 213.95 224.78
10110_S6 5369964 86.87 82.21 3835038 47.17 47.45 199.76 210.11
10113_S7 3862862 89.44 83.54 2886124 36.11 36.31 120.48 126.52
10117_S5 4243470 89.93 85.80 3274194 46.15 46.42 169.10 177.78
10126_S7 5490894 87.68 83.36 4013294 44.39 44.65 198.79 209.00
10131_S1 5338282 87.00 82.62 3836988 53.58 53.88 232.54 244.35
10146_S6 4326882 90.13 85.57 3337118 45.47 45.73 168.34 177.00
10149_S7 4129130 90.01 84.46 3139126 45.78 46.04 159.55 167.77
10155_S5 4450890 86.31 84.99 3264796 46.65 46.91 170.60 179.37
20011_S4 5923516 87.27 85.49 4419628 41.19 41.42 203.82 214.20
20019_S1 3972578 89.46 84.62 3007020 49.39 49.68 163.80 172.27
20022_S4 7091616 88.48 81.02 5083584 47.19 47.47 257.88 271.25
20023_S1 7854298 88.16 81.78 5662728 43.72 43.98 269.47 283.35
20024_S5 6284900 88.04 82.23 4549698 41.85 42.09 215.05 225.92
20062_S2 3554848 88.54 84.13 2648098 40.36 40.54 127.76 133.78
20068_S3 3355298 89.51 84.38 2534292 48.89 49.18 138.43 145.54
20078_S2 7541786 88.33 84.85 5651984 38.94 39.16 246.67 259.20
20088_S4 4083996 90.28 84.33 3109332 33.27 33.46 114.79 120.70
20092_S3 4686060 89.01 83.38 3477852 50.58 50.88 196.38 206.39
20098_S1 4501632 88.21 83.23 3305210 53.58 53.89 197.69 207.78
20106_S2 4430250 86.96 83.43 3214408 45.12 45.32 173.69 181.84
20117_S4 4802994 88.70 86.01 3664364 44.22 44.48 178.18 187.37
20119_S5 4525080 89.19 85.57 3453670 46.90 47.16 180.35 189.59
20122_S6 4741150 88.79 85.18 3585870 51.76 52.07 204.62 215.16
20160_S3 5848296 88.30 84.30 4353508 46.02 46.28 220.04 231.29