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Table 2 DM genes for cytokine/chemokines and their receptor in early RA

From: Differential CpG DNA methylation in peripheral naïve CD4+ T-cells in early rheumatoid arthritis patients

Gene Symbol Naive cells Memory cells Monocytes
Interleukin family
Cluster IL6, IL12A, IL13, IL21, IL25, IL31, IL34, IL36G,
IL1RAPL2, IL5RA, IL6R, IL10RA, IL12RB1, IL15RA, IL17RC, IL17RE, IL17REL, IL27RA
IL1B, IL6, IL12A, IL15, IL17F, IL17D, IL24, IL37,
IL1R2, IL4R, IL6R, IL12RB1, IL15RA, IL17RB, IL17RC, IL17RD, IL17REL, IL20RB, IL21RAS1
IL16, IL37,
IL1RN IL17RC
Isolated CpG IL1B, IL5, IL10, IL15, IL16, IL17C, IL17D, IL19, IL25, IL36B,
IL17RA, IL18RAP, IL18BP, IL1R1, IL1R2, IL1RN, IL2RA, IL2RB
IL17RA IL12
Tumour necrosis growth factor family
Cluster TNF, TNFAIP8, TNFSF10, TNFSF12, TNFSF14,
TNFRSF1A, TNFRSF1B, TNFRSF6, TNFRSF8, TNFRSF10B, TNFRSF13B,
TNFRSF10C, TNFAIP8, TNFAIP8L3,TNFAIP8L1,
TNFRSF9, TNFRSF10B, TNFRSF18, TNFRSF19, TNFRSF25
TNFAIP2, TNFAIP3,
TNFRSF18, TNFRSF19, TNFRSF25
Isolated CpG TNFSF4, TNFSF10, TNFSF12,
TNFRSF10A
TNFRSF13B, TNFRSF13C TNFRSF1B
Interferon family
Cluster IFNA2,
IFNGR2
IFNGR2, IFNGR1  
Isolated CpG IFNL4   
Transforming growth factor family
Cluster TGFBR1, TGFBR2, TGFBR3 TGFB3 TGFB1,
TGFBR2, TGFBR3,
TGFB1, TGFB2AS1
Isolated CpG TGFA, TGFB2-AS1 TGFBR3L TGFA
Chemokine families
Cluster CCL5, CCL16, CCL25, CCL27, CXCL12
CCR3, CCR5, CCR7, CCR9,CCRL2, CXCR4
CXCL2,CXCL5 CCL24, CXCL3, CXCL12, CCR3, CCR9
Isolated CpG CCL2, CCL8, CCL20, CCL24, CXCL11
CXCR1, CXCR5
CCL23, CCL25, CCL28, CXCL1, CXCL3, CXCL11, CXCL14, CXCL12, CXCL16, CCR3, CCR6, CCR9, CCR10, CCRL2, CXCR1, CXCR2, CXCR4 CCL3, CXCL1, CXCL16, CCR7, CXCR1, CXCR4