Chr: start-stop | No. of probes | Gene | Region | MRS | Army STARRS | Stage 1: MRS and Army STARRS | Stage 1: replication in PRISMO | Stage 2: meta-analysis of 3 cohorts | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NES | p value | NES | p value | Z | p value | NES | p value | Z | p value | ||||
6: 33043976-33054001 | 56 | HLA-DPB1 | Body | − 2.08 | 3.45E−05 | − 1.98 | 8.06E−05 | − 5.69 | 1.25E−08 | − 1.05 | 3.51E−01 | − 5.43 | 5.46E−08 |
6: 33048416-33048814 | 17 | HLA-DBP1 | Island | − 2.04 | 6.96E−05 | − 2.25 | 1.62E−04 | − 5.46 | 4.80E−08 | − 1.16 | 2.15E−01 | − 5.38 | 7.49E−08 |
21: 35831697-35832365 | 10 | KCNE1 | Island | − 1.93 | 1.32E−04 | − 2.16 | 1.72E−04 | − 5.33 | 9.99E−08 | − 1.27 | 1.58E−01 | − 5.34 | 8.93E−08 |
21: 35827824-35884508 | 23 | KCNE1 | Promoter | − 1.93 | 9.45E−05 | − 2.00 | 3.42E−04 | − 5.28 | 1.27E−07 | − 1.22 | 1.91E−01 | − 5.26 | 1.46E−07 |
6: 32547019-32557404 | 34 | HLA-DRB1 | Body | − 1.23 | 2.00E−01 | − 2.48 | 1.67E−05 | − 3.67 | 2.43E−04 | − 2.58 | 2.62E−05 | − 5.24 | 1.58E−07 |
7: 1885033-1885402 | 3 | MAD1L1 | Island | − 2.22 | 1.81E−05 | − 2.12 | 1.72E−04 | − 5.69 | 1.25E−08 | − 0.81 | 7.38E−01 | − 5.15 | 2.65E−07 |
7: 27169572-27170638 | 10 | HOXA4 | Island | − 2.21 | 1.73E−05 | − 1.98 | 3.26E−04 | − 5.60 | 2.15E−08 | − 0.84 | 7.46E−01 | − 5.06 | 4.20E−07 |
8: 125461772-125464547 | 9 | TRMT12 | Promoter | − 2.20 | 1.85E−05 | − 1.14 | 2.98E−01 | − 4.01 | 6.11E−05 | − 1.93 | 1.55E−03 | − 5.03 | 4.69E−07 |
6: 32551851-32552331 | 13 | HLA-DRB1 | Island | − 1.25 | 1.79E−01 | − 2.49 | 1.68E−04 | − 3.38 | 7.17E−04 | − 2.52 | 2.59E−05 | − 4.99 | 5.92E−07 |
7: 27169740-27171528 | 24 | HOXA4 | Promoter | − 2.31 | 1.78E−05 | − 1.97 | 3.41E−04 | − 5.59 | 2.31E−08 | − 0.68 | 9.18E−01 | − 4.94 | 7.71E−07 |
6: 25882327-25882560 | 4 | SLC17A3 | Island | − 1.96 | 9.39E−05 | − 1.50 | 4.91E−02 | − 4.29 | 1.81E−05 | − 1.63 | 3.04E−02 | − 4.80 | 1.60E−06 |
1: 156814881-156815792 | 5 | NTRK1 | Island | − 1.51 | 5.29E−02 | − 1.78 | 3.74E−03 | − 3.31 | 9.20E−04 | − 2.12 | 1.16E−04 | − 4.76 | 1.90E−06 |
16: 1561036-1652552 | 121 | IFT140 | Body | − 1.67 | 7.56E−04 | − 1.82 | 5.99E−05 | − 5.12 | 2.92E−07 | − 0.83 | 8.80E−01 | − 4.57 | 4.96E−06 |
17: 8700574-8703341 | 12 | MFSD6L | Promoter | − 2.33 | 1.84E−05 | − 1.82 | 3.56E−03 | − 5.17 | 2.36E−07 | 1.03 | 4.10E−01 | − 4.52 | 6.33E−06 |
16: 1583809-1584641 | 8 | IFI140 | Island | − 2.46 | 1.81E−05 | − 1.79 | 2.75E−03 | − 5.22 | 1.78E−07 | 0.69 | 8.80E−01 | − 4.50 | 6.79E−06 |
5: 191792-192544 | 5 | LRRC14B | Island | − 2.19 | 1.81E−05 | − 1.57 | 2.34E−02 | − 4.77 | 1.83E−06 | − 0.93 | 5.50E−01 | − 4.47 | 7.96E−06 |
6: 168433191-1.68E+08 | 18 | KIF25 | Body | − 2.13 | 5.45E−05 | − 1.79 | 4.11E−03 | − 4.94 | 7.59E−07 | − 0.62 | 9.50E−01 | − 4.36 | 1.30E−05 |
10: 530713-531099 | 5 | DIP2C | Island | − 2.22 | 3.54E−05 | − 1.98 | 5.05E−04 | − 5.40 | 6.63E−08 | 1.148 | 2.60E−01 | − 4.19 | 2.78E−05 |
1: 2986362-3349982 | 608 | PRDM16 | Body | − 1.73 | 1.34E−05 | − 1.43 | 2.06E−04 | − 5.71 | 1.09E−08 | 1.168 | 8.00E−02 | − 4.15 | 3.25E−05 |
17: 8702342-8702824 | 7 | MFSD6L | Island | − 2.19 | 1.84E−05 | − 1.82 | 2.42E−03 | − 5.24 | 1.59E−07 | 0.684 | 8.70E−01 | − 4.13 | 3.57E−05 |
12: 9217328-9217715 | 6 | LINC00612 | Island | − 2.27 | 1.84E−05 | − 2.36 | 1.75E−04 | − 5.69 | 1.30E−08 | 1.465 | 6.00E−02 | − 4.09 | 4.31E−05 |
12: 9217079-9217769 | 9 | LOC144571 | Promoter | − 2.27 | 1.85E−05 | − 2.16 | 1.81E−04 | − 5.68 | 1.34E−08 | 1.530 | 4.00E−02 | − 4.00 | 6.46E−05 |
11: 70672834-70673055 | 6 | SHANK2 | Island | − 2.56 | 1.83E−05 | − 2.32 | 1.73E−04 | − 5.69 | 1.28E−08 | 1.752 | 6.00E−03 | − 3.67 | 2.45E−04 |
17: 76037074-76037323 | 3 | TNRC63 | Island | − 2.03 | 9.29E−05 | − 2.05 | 1.78E−04 | − 5.39 | 7.07E−08 | 1.693 | 1.10E−02 | − 3.49 | 4.82E−04 |