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Table 2 Gene Ontology results for differentially methylated probes and regions

From: DNA methylation associated with postpartum depressive symptoms overlaps findings from a genome-wide association meta-analysis of depression

Ontology

Description

Gene ratio

Bg ratio

p value

q value

Gene ID

BP

Cognition

11/136

284/17397

0.0000

0.038

TTC8/ADORA1/CNTNAP2/MEF2C/MEIS2/NTSR1/PAFAH1B1/ADGRB3/RASGRF1/SLC6A4/SYNGAP1

BP

Learning or memory

9/136

246/17397

0.0001

0.114

CNTNAP2/MEF2C/MEIS2/NTSR1/PAFAH1B1/ADGRB3/RASGRF1/SLC6A4/SYNGAP1

BP

Detection of temperature stimulus involved in sensory perception

3/136

15/17397

0.0002

0.114

ADORA1/ARRB2/NTSR1

BP

Detection of temperature stimulus involved in sensory perception of pain

3/136

15/17397

0.0002

0.114

ADORA1/ARRB2/NTSR1

BP

Dendrite development

8/136

216/17397

0.0003

0.114

CTNND2/COBL/MAP2/MEF2C/PAFAH1B1/ADGRB3/KLF7/SYNGAP1

BP

Detection of temperature stimulus

3/136

19/17397

0.0004

0.114

ADORA1/ARRB2/NTSR1

BP

Modulation of chemical synaptic transmission

11/136

417/17397

0.0004

0.114

ADORA1/SYT9/ARRB2/MEF2C/NTSR1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

BP

Regulation of trans-synaptic signal

11/136

418/17397

0.0004

0.114

ADORA1/SYT9/ARRB2/MEF2C/NTSR1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

BP

Platelet formation

3/136

20/17397

0.0005

0.114

ZFPM1/MEF2C/MYH9

BP

Establishment of cell polarity

6/136

128/17397

0.0005

0.114

SDCCAG8/SH3BP1/MAP2/MYH9/PAFAH1B1/FRMD4A

BP

Actin filament-based process

15/136

723/17397

0.0005

0.114

ABI2/ADORA1/DIAPH2/COBL/SH3BP1/KCNJ5/MEF2C/MYH9/NEB/PAFAH1B1/PLS3/LURAP1/ACTN4/MYOM2/TBCK

BP

Platelet morphogenesis

3/136

21/17397

0.0006

0.114

ZFPM1/MEF2C/MYH9

BP

Sensory perception of temperature stimulus

3/136

21/17397

0.0006

0.114

ADORA1/ARRB2/NTSR1

BP

Behavior

13/136

579/17397

0.0006

0.116

ADORA1/CNTNAP2/KCND2/ARRB2/MEF2C/MEIS2/NTSR1/PAFAH1B1/PEX13/ADGRB3/RASGRF1/SLC6A4/SYNGAP1

BP

Response to hypoxia

9/136

308/17397

0.0007

0.125

ADORA1/HILPDA/KCND2/LMNA/MMP2/HIF3A/SLC6A4/TGFBR2/ACTN4

BP

Regulation of postsynaptic membrane

6/136

139/17397

0.0008

0.128

ADORA1/KCND2/ARRB2/MEF2C/NTSR1/TMEM108

BP

Response to decreased oxygen levels

9/136

319/17397

0.0009

0.128

ADORA1/HILPDA/KCND2/LMNA/MMP2/HIF3A/SLC6A4/TGFBR2/ACTN4

BP

Chemical synaptic transmission

14/136

685/17397

0.0010

0.128

ADORA1/SYT9/GAD2/KCND2/ARRB2/MEF2C/NTSR1/PAFAH1B1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

BP

Anterograde trans-synaptic signaling

14/136

685/17397

0.0010

0.128

ADORA1/SYT9/GAD2/KCND2/ARRB2/MEF2C/NTSR1/PAFAH1B1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

BP

Establishment or maintenance of cell polarity

7/136

199/17397

0.0010

0.128

SDCCAG8/SH3BP1/LMNA/MAP2/MYH9/PAFAH1B1/FRMD4A

BP

Trans-synaptic signaling

14/136

693/17397

0.0011

0.134

ADORA1/SYT9/GAD2/KCND2/ARRB2/MEF2C/NTSR1/PAFAH1B1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

BP

Synaptic signaling

14/136

698/17397

0.0011

0.137

ADORA1/SYT9/GAD2/KCND2/ARRB2/MEF2C/NTSR1/PAFAH1B1/RASGRF1/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3

CC

DNA repair complex

4/141

42/18363

0.0003

0.044

CETN3/ERCC1/PAXX/WRN

CC

Neuron to neuron synapse

10/141

340/18363

0.0003

0.044

ADORA1/SYT9/CTNND2/KCND2/ARRB2/MAP2/NTSR1/TMEM108/SYNGAP1/CLSTN3

CC

Axon part

10/141

373/18363

0.0006

0.049

ADORA1/COBL/CNTNAP2/MAP2/NTSR1/PAFAH1B1/TRPV2/RASGRF1/TMEM108/RNF40

CC

Synapse part

17/141

918/18363

0.0007

0.049

ADORA1/SYT9/CTNND2/GAD2/KCND2/ARRB2/MAP2/MEF2C/NTSR1/COPS4/ADGRB3/SLC6A4/TMEM108/YWHAG/SYNGAP1/CLSTN3/RNF40

CC

Cytoplasmic region

11/141

473/18363

0.0011

0.059

AKT2/FGF1/COBL/SH3BP1/MAP2/MYH9/PAFAH1B1/CFAP46/TMEM108/ACTN4/ARHGEF7

CC

Distal axon

8/141

280/18363

0.0015

0.059

ADORA1/COBL/MAP2/NTSR1/PAFAH1B1/TRPV2/RASGRF1/RNF40

CC

Cell cortex

8/141

288/18363

0.0017

0.059

AKT2/FGF1/COBL/SH3BP1/MYH9/PAFAH1B1/ACTN4/ARHGEF7

CC

Actomyosin

4/141

71/18363

0.0022

0.059

MYH9/LURAP1/ACTN4/HDAC4

CC

Dendrite

12/141

602/18363

0.0024

0.059

ADORA1/CTNND2/COBL/CNTNAP2/KCNIP1/KCND2/ARRB2/MAP2/NTSR1/TMEM108/URI1/SYNGAP1

CC

Dendritic shaft

3/141

35/18363

0.0024

0.059

MAP2/NTSR1/SYNGAP1

CC

Dendritic tree

12/141

604/18363

0.0024

0.059

ADORA1/CTNND2/COBL/CNTNAP2/KCNIP1/KCND2/ARRB2/MAP2/NTSR1/TMEM108/URI1/SYNGAP1

CC

Postsynapse

12/141

604/18363

0.0024

0.059

ADORA1/CTNND2/KCND2/ARRB2/MAP2/MEF2C/NTSR1/ADGRB3/SLC6A4/TMEM108/SYNGAP1/CLSTN3

CC

Postsynaptic density

8/141

315/18363

0.0030

0.059

ADORA1/CTNND2/KCND2/ARRB2/MAP2/TMEM108/SYNGAP1/CLSTN3

CC

Cell leading edge

9/141

389/18363

0.0032

0.059

ABI2/ADORA1/AKT2/COBL/SH3BP1/CNTNAP2/MYH9/PAFAH1B1/ARHGEF7

CC

Cell body

11/141

545/18363

0.0033

0.059

ADORA1/CTNND2/COBL/CNTNAP2/KCND2/MAP2/NTSR1/PAFAH1B1/TRPV2/TCP1/ARHGEF7

CC

Asymmetric synapse

8/141

319/18363

0.0033

0.059

ADORA1/CTNND2/KCND2/ARRB2/MAP2/TMEM108/SYNGAP1/CLSTN3

CC

Somatodendritic compartment

14/141

818/18363

0.0042

0.069

ADORA1/CTNND2/COBL/CNTNAP2/KCNIP1/KCND2/ARRB2/MAP2/NTSR1/PAFAH1B1/TMEM108/URI1/SYNGAP1/ARHGEF7

CC

Dendrite terminus

2/141

13/18363

0.0043

0.069

COBL/MAP2

CC

Postsynaptic specialization

8/141

339/18363

0.0047

0.069

ADORA1/CTNND2/KCND2/ARRB2/MAP2/TMEM108/SYNGAP1/CLSTN3

CC

Voltage-gated potassium channel complex

4/141

89/18363

0.0049

0.069

CNTNAP2/KCNIP1/KCND2/KCNJ5

CC

Nucleotide-excision repair complex

2/141

14/18363

0.0050

0.069

CETN3/ERCC1

CC

Axolemma

2/141

15/18363

0.0058

0.076

ADORA1/CNTNAP2

CC

Axon

11/141

592/18363

0.0060

0.076

ADORA1/COBL/GAD2/CNTNAP2/MAP2/NTSR1/PAFAH1B1/TRPV2/RASGRF1/TMEM108/RNF40

CC

Potassium channel complex

4/141

98/18363

0.0069

0.083

CNTNAP2/KCNIP1/KCND2/KCNJ5

CC

Growth cone part

2/141

17/18363

0.0074

0.086

PAFAH1B1/TRPV2

CC

Growth cone

5/141

165/18363

0.0090

0.100

COBL/MAP2/PAFAH1B1/TRPV2/RASGRF1

CC

Site of polarized growth

5/141

167/18363

0.0094

0.101

COBL/MAP2/PAFAH1B1/TRPV2/RASGRF1

  1. BP biological process, CC cellular component, Bg ratio background ratio