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Table 4 Annotations for the nine overlapping CpGs for the cisplatin-based chemotherapy (CBCT) model and metabolic syndrome (MetS) model for the 2000 CpGs with the lowest unadjusted p values < 0.05

From: Cisplatin treatment of testicular cancer patients introduces long-term changes in the epigenome

Cpg name

Genea

Pb CBCT model

Pb MetS model

Gene function

Disease/Trait associationd

cg25165017

 

< 0.001

0.001

  

cg27087650

BCL3

< 0.001

0.012

Contributes to the regulation of cell proliferation

 

cg10785263

 

< 0.001

0.020

  

cg17986793

MX1

< 0.001

0.022

Gene product, Interferon-induced GTP-binding protein Mx1 is a protein that in humans is encoded by the MX1 gene

 

cg10587886

LMCD1-AS1

< 0.001

0.044

LMCD1 antisense RNA 1

 

cg18871648

ELMSAN1

< 0.001

0.050

ELM2 and Myb/SANT domain containing 1

 

cg07688244

 

< 0.001

0.098

  

cg14792781

GRHL1

< 0.001

0.127

This gene encodes a member of the grainyhead family of transcription factors. The encoded protein can exist as a homodimer or can form heterodimers with sister-of-mammalian grainyhead or brother-of-mammalian grainyhead. This protein functions as a transcription factor during development

 

cg25273039

NXPH1

< 0.001

0.165

The product protein forms a very tight complex with alpha neurexins, a group of proteins that promote adhesion between dendrites and axons

Waist-to-hip ratio adjusted for body mass index, Obesity-related traits

cg19509829

ATP2A2

< 0.001

0.215

Product Belongs to a family of ATPase enzymes that helps control the level of positively charged calcium atoms (calcium ions) inside cells

Glucose homeostasis traits

  1. aGene UCSC gene name
  2. bP unadjusted p value
  3. cSelected from GeneToFunction database (human only) and Gene Cards disease associations