Table 2 Genomic and functional context of IDOL and pickCompProbes (raw and filtered) libraries
pickCompProbes automatic selection: raw | pickCompProbes automatic selection: filtered | IDOL | |
|---|---|---|---|
n = 666 (%) | n = 662 (%) | n = 517 (%) | |
Genomic context | |||
CpG island | 18 (2.7) | 17 (2.6) | 39 (7.5) |
Shelves | 95 (14.2) | 101 (15.3) | 76 (14.7) |
Shores | 100 (15) | 107 (16.2) | 119 (23) |
Open sea | 453 (68.1) | 437 (66.1) | 282 (54.5) |
Functional context | |||
TSS1500 | 72 (10.8) | 74 (11.2) | 71 (13.7) |
TSS200 | 36 (5.4) | 40 (6) | 37 (7.2) |
5'UTR | 81 (12.2) | 80 (12.1) | 75 (14.5) |
Exon1 | 18 (2.7) | 18 (2.7) | 19 (3.7) |
Body | 335 (50.3) | 320 (48.3) | 246 (47.6) |
3′ UTR | 46 (6.9) | 42 (6.3) | 29 (5.6) |
Intergenic | 146 (21.9) | 153 (23.1) | 107 (20.1) |
Enhancers (Phantom 5) | 38 (5.7) | 33 (5) | 19 (3.7) |
DNase hypersensitive sites | 436 (65.5) | 436 (65.9) | 350 (67.7) |