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Table 4 Altered CGIs in biliary tract cancer

From: Clustered protocadherins methylation alterations in cancer

UCSC CGI UCSC CGI name CTCF binding site Δβ value (BTC-control) Δβ value (Intrahepatic chol-control) Δβ value (Extrahepatic chol-control) Δβ value (Gallbladder cancer-control) Δβ value (Extrahepatic/gallbladder-control) Genes within region Gene promoter-associated CGI
chr5:140787447-140788044 CpG 45 chr5:140786247-140788714 0.175 0.104 0.212 0.235 0.229 PCDHGA1, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6 PCDHGB6
chr5:140797162-140797701 CpG 41 chr5:140795962-140798360 0.130 0.108 0.200 0.215 0.209 PCDHGA1, PCDHGA10, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7 PCDHGB7
  1. Note: CGI CpG island, BTC biliary tract cancer, chol cholangiocarcinoma. CpG 45 and 41 correspond to UCSC CGI name