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Table 3 Altered CGIs in gastric cancer

From: Clustered protocadherins methylation alterations in cancer

UCSC CGI UCSC CGI name CTCF binding site Δβ value (GC-control) Genes within region Gene promoter-associated CGI
chr5:140762401-140762768 CpG 28 chr5:140761029-140763470 0.241 PCDHGA1, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGB1, PCDHGB2, PCDHGB3 PCDHGA7
chr5:140787447-140788044 CpG 45 chr5:140786247-140788714 0.210 PCDHGA1, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6 PCDHGB6
chr5:140855386-140856620 CpG 95 chr5:140854218-140856648 0.212 PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7, PCDHGC3 PCDHGC3
chr5:140864527-140864748 CpG 22 0.243 PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7, PCDHGC3, PCDHGC4 PCDHGC4
  1. Note: CGI CpG island, GC gastric cancer. CpG 28, 45, 95 and 22 correspond to UCSC CGI name