From: DNA methylation changes that precede onset of dysplasia in advanced sessile serrated adenomas
Probe | Gene | Methylation logFC (SSAD background vs. SSA)* | Adjusted P value |
---|---|---|---|
Most hypermethylated probes | |||
cg21016956 | NOL4 | 1.493751 | 0.000787 |
cg16916433 | ADAMTS19 | 1.392486 | 0.002431 |
cg07733457 | ZNF594 | 1.363048 | 0.002957 |
cg20388206 | NOL4 | 1.290463 | 0.002242 |
cg08624472 | ARPC1B | 1.253215 | 0.040197 |
cg08326075 | SV2B | 1.251781 | 0.003033 |
cg16552945 | ARHGDIG | 1.233535 | 0.007083 |
cg14933485 | PGR | 1.200440 | 0.000873 |
cg06520273 | CCDC39 | 1.198272 | 0.004478 |
cg07352001 | ZNF32 | 1.197676 | 0.010383 |
cg24713878 | P2RX5 | 1.195933 | 0.037569 |
cg27331401 | MLH1/EPM2AIP1 | 1.194737 | 0.022763 |
cg15353810 | C16orf62 | 1.190115 | 0.005143 |
cg17210604 | HIC1 | 1.180987 | 0.031011 |
cg11224603 | MLH1/EPM2AIP1 | 1.163986 | 0.004474 |
cg22308600 | NOL4 | 1.163516 | 0.005631 |
cg22715021 | CLPSL2 | 1.157144 | 0.035127 |
cg27586588 | MLH1/EPM2AIP1 | 1.154898 | 0.048775 |
cg12609243 | CACNA2D3 | 1.148465 | 0.002208 |
cg11555122 | ZNF594 | 1.142647 | 0.005650 |
Most statistically significant probes | |||
cg16709874 | RCOR3 | 1.017873 | 0.000382 |
cg21016956 | NOL4 | 1.493751 | 0.000787 |
cg14933485 | PGR | 1.200440 | 0.000873 |
cg19809077 | GTF2H4/VARS2 | 0.751390 | 0.000897 |
cg23546619 | BCAS3 | 0.717448 | 0.001064 |
cg17360299 | MYCN | 0.783056 | 0.001130 |
cg06925115 | ATP2B2 | 0.718108 | 0.001319 |
cg26691477 | EN1 | 0.714066 | 0.001326 |
cg05116343 | BAIAP3 | 0.902199 | 0.001433 |
cg24727182 | ETNPPL | 0.748564 | 0.001561 |
cg02357389 | CCDC59/METTL25 | 0.958562 | 0.001634 |
cg09647147 | OGDHL | 0.959377 | 0.001654 |
cg07774938 | CCDC180 | 0.880026 | 0.001682 |
cg11680300 | AUTS2 | 1.135098 | 0.001693 |
cg02945056 | GCC1 | 0.831327 | 0.001795 |
cg00142257 | LHX6 | 0.789183 | 0.001795 |
cg04987474 | HDHD3 | 0.561859 | 0.001948 |
cg21267231 | DUOX2 | 0.557276 | 0.002008 |
cg09982069 | XPO4 | 0.909124 | 0.002033 |
cg10043101 | ATP1B2 | 0.940714 | 0.002133 |