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Table 2. Hypermethylated promoter island probes showing largest differences between SSAD backgrounds and SSAs

From: DNA methylation changes that precede onset of dysplasia in advanced sessile serrated adenomas

Probe

Gene

Methylation logFC (SSAD background vs. SSA)*

Adjusted P value

Most hypermethylated probes

 

 cg21016956

NOL4

1.493751

0.000787

 cg16916433

ADAMTS19

1.392486

0.002431

 cg07733457

ZNF594

1.363048

0.002957

 cg20388206

NOL4

1.290463

0.002242

 cg08624472

ARPC1B

1.253215

0.040197

 cg08326075

SV2B

1.251781

0.003033

 cg16552945

ARHGDIG

1.233535

0.007083

 cg14933485

PGR

1.200440

0.000873

 cg06520273

CCDC39

1.198272

0.004478

 cg07352001

ZNF32

1.197676

0.010383

 cg24713878

P2RX5

1.195933

0.037569

 cg27331401

MLH1/EPM2AIP1

1.194737

0.022763

 cg15353810

C16orf62

1.190115

0.005143

 cg17210604

HIC1

1.180987

0.031011

 cg11224603

MLH1/EPM2AIP1

1.163986

0.004474

 cg22308600

NOL4

1.163516

0.005631

 cg22715021

CLPSL2

1.157144

0.035127

 cg27586588

MLH1/EPM2AIP1

1.154898

0.048775

 cg12609243

CACNA2D3

1.148465

0.002208

 cg11555122

ZNF594

1.142647

0.005650

Most statistically significant probes

 

 cg16709874

RCOR3

1.017873

0.000382

 cg21016956

NOL4

1.493751

0.000787

 cg14933485

PGR

1.200440

0.000873

 cg19809077

GTF2H4/VARS2

0.751390

0.000897

 cg23546619

BCAS3

0.717448

0.001064

 cg17360299

MYCN

0.783056

0.001130

 cg06925115

ATP2B2

0.718108

0.001319

 cg26691477

EN1

0.714066

0.001326

 cg05116343

BAIAP3

0.902199

0.001433

 cg24727182

ETNPPL

0.748564

0.001561

 cg02357389

CCDC59/METTL25

0.958562

0.001634

 cg09647147

OGDHL

0.959377

0.001654

 cg07774938

CCDC180

0.880026

0.001682

 cg11680300

AUTS2

1.135098

0.001693

 cg02945056

GCC1

0.831327

0.001795

 cg00142257

LHX6

0.789183

0.001795

 cg04987474

HDHD3

0.561859

0.001948

 cg21267231

DUOX2

0.557276

0.002008

 cg09982069

XPO4

0.909124

0.002033

 cg10043101

ATP1B2

0.940714

0.002133

  1. *A methylation logFC value of > 0 indicates hypermethylation in SSAD background compared with SSA. SSAD sessile serrated adenoma with dysplasia, SSA sessile serrated adenoma