Skip to main content

Table 8 Top 100 differentially methylated probes according to baseline depression (BDI-II)

From: Exploring the effect of antenatal depression treatment on children’s epigenetic profiles: findings from a pilot randomized controlled trial

CpG

p

Adjusted pa

Gene

Gene region

∆β

cg01656717

5.43E-05

0.985858571

WWP2

Body

0.020713379

cg06022376

5.62E-05

0.985858571

CACTIN

Body

0.031934062

cg01120173

5.91E-05

0.985858571

ZNF232

5′UTR

− 0.032894902

cg24732447

8.42E-05

0.985858571

OSTM1

TSS1500

− 0.040891939

cg17402103

9.76E-05

0.985858571

  

0.044389084

cg10276665

0.000102293

0.985858571

PHF20

5′UTR

− 0.053135525

cg23119960

0.000108933

0.985858571

TCF12

TSS1500

0.019411015

cg07639472

0.000110211

0.985858571

GABARAP

TSS200

0.009595275

cg14522236

0.000112046

0.985858571

  

− 0.049713856

cg16561657

0.000150143

0.985858571

  

− 0.055819652

cg21014120

0.00015174

0.985858571

ICA1L

TSS200

− 0.006901363

cg02965870

0.000158156

0.985858571

NEDD4

1stExon

− 0.005222348

cg19817882

0.000171789

0.985858571

LEFTY1

Body

0.034762224

cg02644616

0.000173319

0.985858571

  

− 0.00792669

cg00369151

0.000179443

0.985858571

PIP4K2A

Body

− 0.036713932

cg24954665

0.000194603

0.985858571

  

− 0.018476691

cg08217452

0.000200085

0.985858571

  

0.062010845

cg22796353

0.000209579

0.985858571

  

− 0.06798597

cg05636467

0.000213261

0.985858571

EBF3

Body

0.058972943

cg01870580

0.000213772

0.985858571

SGCD

Body

− 0.033578993

cg04167481

0.000227738

0.985858571

LRRC6

Body

− 0.02281918

cg07010552

0.000233

0.985858571

CHRNB1

Body

0.03251269

cg09877950

0.000238965

0.985858571

SLC4A10

Body

− 0.050949676

cg08548444

0.000241925

0.985858571

  

0.058594659

cg22870344

0.000242958

0.985858571

ATP5B

TSS200

0.040824173

cg16692066

0.000251174

0.985858571

FNDC7

Body

− 0.027886693

cg03781315

0.00025551

0.985858571

AHCY

Body

− 0.020798236

cg18303019

0.000261834

0.985858571

TXNRD1

TSS1500

− 0.03100706

cg07381391

0.000267381

0.985858571

  

0.203102371

cg17115402

0.000269335

0.985858571

CDR2L

Body

− 0.020519014

cg23788051

0.000272662

0.985858571

  

0.034154924

cg15234197

0.000277725

0.985858571

  

0.09308691

cg22521539

0.000282937

0.985858571

  

0.049648454

cg25157095

0.000284638

0.985858571

RIPK4

Body

0.029861946

cg25464078

0.000290016

0.985858571

PPTC7

Body

0.041450584

cg24667213

0.000295285

0.985858571

  

0.021353983

cg03716908

0.00029717

0.985858571

  

0.036164552

cg11747082

0.000319919

0.985858571

GPR33

TSS1500

− 0.043309753

cg08446512

0.000321548

0.985858571

MIR548Q

Body

− 0.057652312

cg10239816

0.000321981

0.985858571

GOT1

TSS200

0.010999285

cg24632014

0.000329696

0.985858571

LOC100189589

Body

0.033737209

cg14255237

0.000331265

0.985858571

SARDH

Body

0.068885565

cg01874640

0.000341932

0.985858571

HGD

ExonBnd

− 0.027385445

cg12308055

0.000342843

0.985858571

VAC14

Body

0.025670901

cg13747435

0.000353254

0.985858571

AK1

Body

0.02153699

cg26287679

0.000353404

0.985858571

MYBL1

Body

− 0.036514738

cg27305222

0.000359452

0.985858571

  

− 0.040634637

cg09694986

0.000364186

0.985858571

SNTB1

Body

− 0.041411009

cg04928577

0.000370129

0.985858571

  

− 0.069549039

cg02059927

0.000376777

0.985858571

  

0.045567447

cg19553615

0.000379462

0.985858571

CRTC3

Body

0.021785594

cg06214427

0.000382521

0.985858571

MYO1A

Body

− 0.027829513

cg14609960

0.000388595

0.985858571

PITRM1

Body

− 0.03071115

cg07814876

0.000392304

0.985858571

GGPS1

5′UTR

0.02176791

cg03656020

0.000394532

0.985858571

VGF

3′UTR

0.02323939

cg16977720

0.000414373

0.985858571

TRABD2A

Body

− 0.015144172

cg11173076

0.00041489

0.985858571

ART1

TSS200

0.051579054

cg11407226

0.000427414

0.985858571

  

0.052957159

cg24676514

0.000428063

0.985858571

  

0.007114356

cg24353217

0.000430568

0.985858571

MYL2

Body

0.048161701

cg13022689

0.000438434

0.985858571

  

− 0.014053374

cg08013270

0.000452709

0.985858571

EMX1

Body

0.009802214

cg10486455

0.000457554

0.985858571

WDR46

Body

− 0.071572335

cg08824610

0.000457605

0.985858571

SCN3B

Body

0.032374425

cg23934072

0.00046317

0.985858571

KIF21B

3′UTR

0.072005944

cg08882432

0.000492053

0.985858571

CCDC171

Body

− 0.06825542

cg19075081

0.000509177

0.985858571

MTSS1L

Body

0.034977378

cg14940449

0.000513204

0.985858571

HGS

TSS200

− 0.004493762

cg27644292

0.000535008

0.985858571

SNRPN

5′UTR

− 0.043063624

cg13277044

0.000537047

0.985858571

  

− 0.028669058

cg10313065

0.000547596

0.985858571

  

0.027390264

cg27483342

0.000549745

0.985858571

  

− 0.035483152

cg00167525

0.00054993

0.985858571

  

− 0.044404069

cg02624701

0.000556261

0.985858571

SLC17A7

Body

− 0.023735747

cg24488506

0.000559886

0.985858571

FOSL1

1stExon

− 0.005249818

cg10894284

0.000567688

0.985858571

SPATS2

Body

− 0.05283773

cg00045787

0.0005679

0.985858571

SNTB2

Body

0.021702408

cg22379574

0.000572536

0.985858571

TPT1

TSS200

0.002542434

cg09381162

0.000579437

0.985858571

ANXA13

Body

− 0.038107869

cg10562399

0.000581216

0.985858571

SNRPG

Body

0.049683592

cg17422878

0.000584164

0.985858571

  

− 0.01955572

cg16460816

0.000592284

0.985858571

IFT140

Body

0.016906513

cg22647874

0.000594316

0.985858571

FAM192A

5′UTR

− 0.01781755

cg04157647

0.000594803

0.985858571

CD27-AS1

Body

− 0.068075731

cg14436051

0.000595366

0.985858571

PRR26

Body

− 0.018081196

cg11629443

0.000598589

0.985858571

TRIM27

1stExon

0.005616034

cg03163982

0.00059979

0.985858571

  

− 0.008328044

cg11475558

0.000600783

0.985858571

TNS1

Body

0.028042851

cg18014277

0.000608293

0.985858571

APBB1IP

3′UTR

− 0.016579214

cg02597373

0.000619621

0.985858571

UNC13D

Body

0.05993223

cg23123838

0.000622213

0.985858571

MTA1

TSS200

0.023497892

cg03278573

0.000627109

0.985858571

DAP

Body

− 0.064990789

cg15674937

0.000643134

0.985858571

  

0.073468304

cg01126532

0.000643521

0.985858571

  

− 0.081499283

cg04736676

0.000662804

0.985858571

MCM3AP

TSS1500

0.012334518

cg11240430

0.000664374

0.985858571

ANKRD16

5′UTR

0.017463959

cg00154646

0.000664385

0.985858571

  

− 0.022644413

cg06434997

0.000669569

0.985858571

FBXO5

5′UTR

0.023162548

cg02030350

0.00067758

0.985858571

 

Body

− 0.030538262

cg13357903

0.000693814

0.985858571

MIA3

TSS1500

0.012988536

  1. ∆β = mean β (severely depressed) − mean β (mildly depressed)
  2. TSS transcription start site, UTR untranslated region
  3. aAdjusted for multiple testing [46]