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Table 8 Top 100 differentially methylated probes according to baseline depression (BDI-II)

From: Exploring the effect of antenatal depression treatment on children’s epigenetic profiles: findings from a pilot randomized controlled trial

CpG p Adjusted pa Gene Gene region ∆β
cg01656717 5.43E-05 0.985858571 WWP2 Body 0.020713379
cg06022376 5.62E-05 0.985858571 CACTIN Body 0.031934062
cg01120173 5.91E-05 0.985858571 ZNF232 5′UTR − 0.032894902
cg24732447 8.42E-05 0.985858571 OSTM1 TSS1500 − 0.040891939
cg17402103 9.76E-05 0.985858571    0.044389084
cg10276665 0.000102293 0.985858571 PHF20 5′UTR − 0.053135525
cg23119960 0.000108933 0.985858571 TCF12 TSS1500 0.019411015
cg07639472 0.000110211 0.985858571 GABARAP TSS200 0.009595275
cg14522236 0.000112046 0.985858571    − 0.049713856
cg16561657 0.000150143 0.985858571    − 0.055819652
cg21014120 0.00015174 0.985858571 ICA1L TSS200 − 0.006901363
cg02965870 0.000158156 0.985858571 NEDD4 1stExon − 0.005222348
cg19817882 0.000171789 0.985858571 LEFTY1 Body 0.034762224
cg02644616 0.000173319 0.985858571    − 0.00792669
cg00369151 0.000179443 0.985858571 PIP4K2A Body − 0.036713932
cg24954665 0.000194603 0.985858571    − 0.018476691
cg08217452 0.000200085 0.985858571    0.062010845
cg22796353 0.000209579 0.985858571    − 0.06798597
cg05636467 0.000213261 0.985858571 EBF3 Body 0.058972943
cg01870580 0.000213772 0.985858571 SGCD Body − 0.033578993
cg04167481 0.000227738 0.985858571 LRRC6 Body − 0.02281918
cg07010552 0.000233 0.985858571 CHRNB1 Body 0.03251269
cg09877950 0.000238965 0.985858571 SLC4A10 Body − 0.050949676
cg08548444 0.000241925 0.985858571    0.058594659
cg22870344 0.000242958 0.985858571 ATP5B TSS200 0.040824173
cg16692066 0.000251174 0.985858571 FNDC7 Body − 0.027886693
cg03781315 0.00025551 0.985858571 AHCY Body − 0.020798236
cg18303019 0.000261834 0.985858571 TXNRD1 TSS1500 − 0.03100706
cg07381391 0.000267381 0.985858571    0.203102371
cg17115402 0.000269335 0.985858571 CDR2L Body − 0.020519014
cg23788051 0.000272662 0.985858571    0.034154924
cg15234197 0.000277725 0.985858571    0.09308691
cg22521539 0.000282937 0.985858571    0.049648454
cg25157095 0.000284638 0.985858571 RIPK4 Body 0.029861946
cg25464078 0.000290016 0.985858571 PPTC7 Body 0.041450584
cg24667213 0.000295285 0.985858571    0.021353983
cg03716908 0.00029717 0.985858571    0.036164552
cg11747082 0.000319919 0.985858571 GPR33 TSS1500 − 0.043309753
cg08446512 0.000321548 0.985858571 MIR548Q Body − 0.057652312
cg10239816 0.000321981 0.985858571 GOT1 TSS200 0.010999285
cg24632014 0.000329696 0.985858571 LOC100189589 Body 0.033737209
cg14255237 0.000331265 0.985858571 SARDH Body 0.068885565
cg01874640 0.000341932 0.985858571 HGD ExonBnd − 0.027385445
cg12308055 0.000342843 0.985858571 VAC14 Body 0.025670901
cg13747435 0.000353254 0.985858571 AK1 Body 0.02153699
cg26287679 0.000353404 0.985858571 MYBL1 Body − 0.036514738
cg27305222 0.000359452 0.985858571    − 0.040634637
cg09694986 0.000364186 0.985858571 SNTB1 Body − 0.041411009
cg04928577 0.000370129 0.985858571    − 0.069549039
cg02059927 0.000376777 0.985858571    0.045567447
cg19553615 0.000379462 0.985858571 CRTC3 Body 0.021785594
cg06214427 0.000382521 0.985858571 MYO1A Body − 0.027829513
cg14609960 0.000388595 0.985858571 PITRM1 Body − 0.03071115
cg07814876 0.000392304 0.985858571 GGPS1 5′UTR 0.02176791
cg03656020 0.000394532 0.985858571 VGF 3′UTR 0.02323939
cg16977720 0.000414373 0.985858571 TRABD2A Body − 0.015144172
cg11173076 0.00041489 0.985858571 ART1 TSS200 0.051579054
cg11407226 0.000427414 0.985858571    0.052957159
cg24676514 0.000428063 0.985858571    0.007114356
cg24353217 0.000430568 0.985858571 MYL2 Body 0.048161701
cg13022689 0.000438434 0.985858571    − 0.014053374
cg08013270 0.000452709 0.985858571 EMX1 Body 0.009802214
cg10486455 0.000457554 0.985858571 WDR46 Body − 0.071572335
cg08824610 0.000457605 0.985858571 SCN3B Body 0.032374425
cg23934072 0.00046317 0.985858571 KIF21B 3′UTR 0.072005944
cg08882432 0.000492053 0.985858571 CCDC171 Body − 0.06825542
cg19075081 0.000509177 0.985858571 MTSS1L Body 0.034977378
cg14940449 0.000513204 0.985858571 HGS TSS200 − 0.004493762
cg27644292 0.000535008 0.985858571 SNRPN 5′UTR − 0.043063624
cg13277044 0.000537047 0.985858571    − 0.028669058
cg10313065 0.000547596 0.985858571    0.027390264
cg27483342 0.000549745 0.985858571    − 0.035483152
cg00167525 0.00054993 0.985858571    − 0.044404069
cg02624701 0.000556261 0.985858571 SLC17A7 Body − 0.023735747
cg24488506 0.000559886 0.985858571 FOSL1 1stExon − 0.005249818
cg10894284 0.000567688 0.985858571 SPATS2 Body − 0.05283773
cg00045787 0.0005679 0.985858571 SNTB2 Body 0.021702408
cg22379574 0.000572536 0.985858571 TPT1 TSS200 0.002542434
cg09381162 0.000579437 0.985858571 ANXA13 Body − 0.038107869
cg10562399 0.000581216 0.985858571 SNRPG Body 0.049683592
cg17422878 0.000584164 0.985858571    − 0.01955572
cg16460816 0.000592284 0.985858571 IFT140 Body 0.016906513
cg22647874 0.000594316 0.985858571 FAM192A 5′UTR − 0.01781755
cg04157647 0.000594803 0.985858571 CD27-AS1 Body − 0.068075731
cg14436051 0.000595366 0.985858571 PRR26 Body − 0.018081196
cg11629443 0.000598589 0.985858571 TRIM27 1stExon 0.005616034
cg03163982 0.00059979 0.985858571    − 0.008328044
cg11475558 0.000600783 0.985858571 TNS1 Body 0.028042851
cg18014277 0.000608293 0.985858571 APBB1IP 3′UTR − 0.016579214
cg02597373 0.000619621 0.985858571 UNC13D Body 0.05993223
cg23123838 0.000622213 0.985858571 MTA1 TSS200 0.023497892
cg03278573 0.000627109 0.985858571 DAP Body − 0.064990789
cg15674937 0.000643134 0.985858571    0.073468304
cg01126532 0.000643521 0.985858571    − 0.081499283
cg04736676 0.000662804 0.985858571 MCM3AP TSS1500 0.012334518
cg11240430 0.000664374 0.985858571 ANKRD16 5′UTR 0.017463959
cg00154646 0.000664385 0.985858571    − 0.022644413
cg06434997 0.000669569 0.985858571 FBXO5 5′UTR 0.023162548
cg02030350 0.00067758 0.985858571   Body − 0.030538262
cg13357903 0.000693814 0.985858571 MIA3 TSS1500 0.012988536
  1. ∆β = mean β (severely depressed) − mean β (mildly depressed)
  2. TSS transcription start site, UTR untranslated region
  3. aAdjusted for multiple testing [46]