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Table 3 Top 100 differentially methylated probes according to intervention

From: Exploring the effect of antenatal depression treatment on children’s epigenetic profiles: findings from a pilot randomized controlled trial

CpG p Adjusted pa Gene Gene region ∆β
cg19908420 3.40E-06 0.999997557    0.049137862
cg15495292 4.01E-06 0.999997557 AIG1 Body 0.079710136
cg05155812 1.56E-05 0.999997557 SUN1 TSS1500 − 0.280713404
cg18818484 2.20E-05 0.999997557 PTCHD2   0.022078691
cg17622532 2.21E-05 0.999997557    0.024836631
cg14034519 2.27E-05 0.999997557 SNX1 Body 0.053471841
cg26436424 3.24E-05 0.999997557 NGEF Body 0.033261363
cg21494953 3.48E-05 0.999997557 C5orf23 TSS1500 0.036133838
cg19232929 3.58E-05 0.999997557    0.054387673
cg22342380 3.86E-05 0.999997557    0.03688025
cg13719771 5.98E-05 0.999997557 NDUFA9 Body 0.13765872
cg10356363 6.06E-05 0.999997557 CEBPB TSS1500 0.026639222
cg05205351 6.20E-05 0.999997557 NOP56 Body 0.05930508
cg14231326 6.23E-05 0.999997557    0.031289864
cg14358699 7.14E-05 0.999997557    0.047991502
cg06961812 8.01E-05 0.999997557 PRODH2 Body 0.058582642
cg16007230 8.39E-05 0.999997557 ABCC3 ExonBnd 0.036161879
cg25968469 8.53E-05 0.999997557 ARHGAP22 Body 0.056699144
cg23619591 8.80E-05 0.999997557 C19orf81 Body 0.057592082
cg09240747 0.000101189 0.999997557    0.067301777
cg18077049 0.000101567 0.999997557 GLRA3 Body 0.116790545
cg24435401 0.000110721 0.999997557 NPAS4 TSS1500 0.021387283
cg23274420 0.000110944 0.999997557    0.068615769
cg09223928 0.000111509 0.999997557    0.030359585
cg18666104 0.000115314 0.999997557 CORO1C Body 0.058415174
cg16273469 0.000115391 0.999997557    0.036049214
cg00541777 0.000120288 0.999997557 COLEC11 TSS1500 0.120518141
cg06646082 0.0001208 0.999997557 BTBD17 TSS1500 0.0430183
cg03711840 0.000127893 0.999997557 PLXNA1 Body 0.043191584
cg19465002 0.000130791 0.999997557    0.033852961
cg14687471 0.000134464 0.999997557 NBR2 Body 0.023128809
cg27243560 0.000134814 0.999997557    0.031689225
cg05510714 0.000135017 0.999997557 KYNU Body 0.153887531
cg12987887 0.000136898 0.999997557 UPB1 ExonBnd − 0.01972518
cg26836955 0.000138572 0.999997557 LONP1 Body 0.039104166
cg26330841 0.000138665 0.999997557    0.032962344
cg16720807 0.000142967 0.999997557 FAM176A 5′UTR 0.042119403
cg01440210 0.000143289 0.999997557    0.030341728
cg17068417 0.000144326 0.999997557 EEFSEC Body 0.030665165
cg15313810 0.000144443 0.999997557 ST6GALNAC4 Body 0.029787439
cg07545731 0.000147518 0.999997557 COL22A1 Body 0.04468122
cg14684297 0.000150469 0.999997557 ARHGAP33 5′UTR 0.032019831
cg10727673 0.000154265 0.999997557 TMEM22 TSS1500 0.089444195
cg04798314 0.000155738 0.999997557 SMYD3 Body 0.323390033
cg11035122 0.000160944 0.999997557 MIR758 TSS1500 0.055539324
cg12360330 0.000168181 0.999997557 CENPJ Body 0.032193572
cg07469546 0.000172234 0.999997557    0.014405304
cg17785398 0.000172977 0.999997557 KCNJ6 Body 0.022656857
cg18291664 0.000173083 0.999997557 PRKAR1B Body 0.040654976
cg09319487 0.000181803 0.999997557    0.033053753
cg11510586 0.000186082 0.999997557    0.107251714
cg25441526 0.000188457 0.999997557 WDFY4 Body 0.025251026
cg19379103 0.000188787 0.999997557 SSBP3 Body 0.031870653
cg19769811 0.00019183 0.999997557 RASGRF2 TSS1500 0.046395706
cg26221509 0.000199233 0.999997557 SCUBE1 Body 0.039685931
cg14700416 0.000199451 0.999997557 SPOCK3 5′UTR 0.049430209
cg22746421 0.000200331 0.999997557    0.02669027
cg23553242 0.000200938 0.999997557 USP2 Body 0.043740484
cg06617093 0.000206244 0.999997557    0.032231234
cg08670534 0.000206305 0.999997557 COL2A1 Body 0.032117847
cg15791944 0.000212127 0.999997557    0.055152706
cg17562896 0.000216404 0.999997557 SV2C Body 0.037479302
cg02018176 0.000217297 0.999997557 KIAA1530 Body 0.047057842
cg11576176 0.000220243 0.999997557 GSX2 1stExon 0.03556139
cg09480336 0.0002295 0.999997557 POLD1 Body 0.03212232
cg21592262 0.000233681 0.999997557    0.06371313
cg12472342 0.000234117 0.999997557    − 0.069235248
cg18361948 0.00023564 0.999997557    0.029932491
cg00945089 0.000236572 0.999997557 GFRA1 Body 0.033266209
cg07442357 0.000238546 0.999997557    0.01892614
cg09193498 0.000239232 0.999997557 SEZ6 Body 0.042776024
cg02438610 0.000240811 0.999997557 SUN1 TSS1500 − 0.013139753
cg15037661 0.00024103 0.999997557 NR1D2 TSS1500 0.00946764
cg26264656 0.000243011 0.999997557 SKI Body 0.034797294
cg24367840 0.000243465 0.999997557 PSMD14 Body 0.057487682
cg05289897 0.000259274 0.999997557    0.012403078
cg16419764 0.000261486 0.999997557 CDYL Body 0.026043028
cg00248302 0.000266776 0.999997557 FCRL5 Body 0.028022889
cg24900542 0.000269678 0.999997557    0.085875055
cg15078841 0.000272298 0.999997557    0.022837528
cg12541879 0.000282436 0.999997557 PTPRN2 Body 0.056208383
cg01976641 0.000283246 0.999997557    0.05497368
cg17121322 0.000286514 0.999997557    0.025193249
cg17547875 0.000288231 0.999997557    0.01236688
cg18169610 0.000296554 0.999997557 CD81 Body 0.038708
cg04801704 0.000304651 0.999997557 TLL2 Body 0.025096532
cg23425290 0.000307508 0.999997557 ABCC1 Body 0.023343856
cg22680931 0.00030882 0.999997557 TMEM167B TSS1500 0.122894387
cg01723825 0.000310423 0.999997557 URI1 TSS200 0.039217642
cg16261251 0.000311941 0.999997557    0.06722457
cg01400541 0.000314878 0.999997557 C10orf128 Body 0.042719378
cg26796807 0.000318004 0.999997557    0.04717045
cg10038145 0.000319876 0.999997557 POR Body 0.045738894
cg09078103 0.000320468 0.999997557 SNX9 Body 0.027261168
cg08880699 0.000322485 0.999997557    0.043133838
cg03116452 0.00032398 0.999997557 PLD3 5′UTR 0.034421382
cg03071994 0.000324145 0.999997557 NR4A1 Body 0.029626215
cg21485062 0.000324634 0.999997557 C7orf25 Body 0.024308813
cg11504793 0.000326763 0.999997557 NOL4L Body 0.025196146
cg04837576 0.00032871 0.999997557 ADRBK2 Body 0.030823149
  1. ∆β = mean β (treatment as usual) − mean β (cognitive behavioral therapy)
  2. TSS transcription start site, UTR untranslated region
  3. aAdjusted for multiple testing [45]