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Table 2 Characterization of the top 11 most significant CpG sites

From: Significantly altered peripheral blood cell DNA methylation profile as a result of immediate effect of metformin use in healthy individuals

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CpG site

Chr

logFC

M10h vs M0

logFC

M7d vs M0

FDR

M10h vs M0

FDR

M7d vs M0

Gene

Distance to the closest TSS

Gene contexta

Spearman’s correlation between methylation and transcription

Significant in both of the following contrasts: M10h vs M0 and M7d vs M0

cg03515060

21

0.538

0.479

0.003

0.018

POFUT2

1984

Body

− 0.184

cg18394557

17

0.406

0.286

0.003

0.047

CAMKK1

− 8799

Body

− 0.042

cg16013966

11

0.428

0.395

0.034

0.037

EML3

− 308

1stExon;5’UTR;TSS1500

− 0.23

cg05638165

1

0.358

0.351

0.035

0.034

KIAA1614

14,198

Body

− 0.337

cg18824330

19

0.363

0.419

0.043

0.022

UPF1

− 9944

Body

− 0.382

Significant in one of the contrasts and medians for time points M10h or M7d in IQR

cg12740863

3

− 0.359

− 0.260

0.034

0.127

MUC4

− 26,158

 

0.37

cg16843994

2

0.347

0.404

0.091

0.038

LOC727982

− 706

 

NA

cg12162450

2

− 0.386

− 0.349

0.040

0.059

SIX3

7515

 

NA

cg19176072

10

0.462

0.472

0.054

0.040

ADAM8

5756

Body

− 0.312

cg01644741

20

− 0.287

− 0.366

0.137

0.043

SNORD12B

39

Body,TSS1500

0.036

cg02622542

3

0.269

0.348

0.151

0.047

VPS8

− 2419

 

0.166

  1. Statistically significant FDR values are marked in italics
  2. 5′UTR 5′ untranslated region, TSS transcription starting site
  3. aTSS1500: Region 200–1500 base pairs upstream of the transcription start site