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Table 3 MSigDB Pathways enriched by DMRs with nominal p < 0.05 from GREAT analysis

From: Epigenetic signature of preterm birth in adult twins

Binomial model

Hypergeometric model

Term Name

Rawp value

FDR

Fold enrichment

Exp.

Obs.

Gene Hits

Rawp value

FDR

Fold enrichment

Exp.

Obs.Gene Hits

TotalGenes

Antigen processing and presentation

1.33e−55

1.76e−52

12.28

6.27

77

3.55e−5

9.37e−3

2.10

13.79

29

80

Graft-versus-host disease

5.65e−53

3.73e−50

14.46

4.63

67

2.17e−6

9.56e−4

2.98

6.38

19

37

Type I diabetes mellitus

1.52e−50

6.72e−48

10.20

7.65

78

1.24e-7

1.63e−4

3.11

7.07

22

41

Allograft rejection

7.25e−50

2.40e−47

12.55

5.42

68

7.10e-7

4.69e−4

3.15

6.03

19

35

Viral myocarditis

4.92e-30

8.13e−28

5.13

15.02

77

9.64e-6

3.18e−3

2.30

11.72

27

68