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Table 2 Characteristics of the cytogenetic low-risk group according to DNA methylation/hydroxymethylation levels

From: Combining cytogenetic and epigenetic approaches in chronic lymphocytic leukemia improves prognosis prediction for patients with isolated 13q deletion

 

CLL patients with del(13q)

 

5-mCyt low (n = 12)

5-mCyt high (n = 18)

Statistics (p)

5-hmCyt low (n = 15)

5-hmCyt high (n = 15)

Statistics (p)

Age at diagnosis, mean (±SD)

65.8 (± 8.5)

61.4 (± 8.0)

NS

66.2 (± 8.6)

60.2 (± 7.2)

NS

Age at study entry, mean (±SD)

69.8 (± 7.6)

67.2 (± 8.4)

NS

69.6 (± 8.4)

66.9 (± 7.7)

NS

Binet stage, No. of patients (%)

  

0.02

  

NS

 A

6/12 (50%)

16/18 (88.9%)

 

9/15 (60%)

12/15 (80%)

 

 B/C

6/12 (50%)

2/18 (11.1%)

 

6/15 (40%)

3/15 (20%)

 

Lymphocytosis (Giga/L), mean (±SD)

53.53 (± 38.30)

33.93 (± 19.9)

NS

34.6 (± 28.6)

48.9 (± 30.0)

NS

IGHV status, No. of patients (%)

  

NS

  

NS

Unmutated (≥ 98% homology)

1/7 (14.3%)

0/12 (0%)

 

1/9 (11.1%)

0/10 (0%)

 

Mutated (< 98% homology)

6/7 (85.7%)

12/12 (100%)

 

8/9 (88.9%)

10/10 (100%)

 

CD38 > 30%, No. of patients (%)

5/12 (41.7%)

4/16 (25%)

NS

6/15 (40%)

3/13 (23%)

NS

del(13q), > 80% nuclei (%)

7/12 (58.3%)

3/18 (16.7%)

0.02

4/15 (26.7%)

6/15 (40%)

NS

del(13q), biallelic

4/12 (33.3%)

12/18 (66.7%)

NS

6/15 (40%)

10/15 (66.7%)

NS

LDT from diagnosis, median (months)a

12

36

NS

24

18

NS

PFS, median (months)a

44.5

120

0.01

56

> 120

0.02

TFS, median (months)a

45

> 120

0.0008

63

> 120

0.04

  1. Abbreviations: 5-mCyt 5-methylcytosine, 5-hmCyt 5-hydroxymethylcytosine, NS not significant, No. number, SD standard deviation, IGHV immunoglobulin heavy-chain variable region, LDT lymphocyte doubling time, PFS progression-free survival, TFS treatment-free survival, del deletion
  2. aKaplan–Meier survival analysis