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Table 1 The list of PCR primers

From: The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome

Unique regions ChIP primers

 pax2-F

CTGGCACTGACATCTTGTGG

 pax2-R

TGGGACCTGTAGTCCTGACC

 anapc13-F

TCCTAAGCCGTCCTGTAGTCC

 anapc13-R

GGGTGTCCATCATCTGAGTCC

 alox8-F

GTATGAGGTGGGCCTGAGTG

 alox8-R

AAGCCCTGCCTAAATGTGTG

 ebf1-F

AACTGAGCCTTAGGGGAAGC

 ebf1-R

TCAGGGTTCAATCTCCAAGG

 cebpb-F

AGAGTTCTGCTTCCCAGGAGT

 cebpb-R

GGAAACAGATCGTTCCTCCA

 fez1-F

GAGGGTGGGACGTATTTCAGT

 fez1-R

CAGCCTTCTTTCCCTCACAA

 pcdhb22-F

GCAGTAATGCCAGCAATGG

 pcdhb22-R

TCCAGTTGGTTGGGTTTCAT

RT-qPCR primers

 

 Rnh1-F (Housing keeping gene)

TCCAGTGTGAGCAGCTGAG

 Rnh1-R (Housing keeping gene)

TGCAGGCACTGAAGCACCA

 Nipbl-F

AGTCCATATGCCCCACAGAG

 Nipbl-R

ACCGGCAACAATAGGACTTG

 Rad21-F

AGCCAAGAGGAAGAGGAAGC

 Rad21-R

AGCCAGGTCCAGAGTCGTAA

 Cebpb-F

GCGGGGTTGTTGATGTTT

 Cebpb-R

ATGCTCGAAACGGAAAAGG

 Cebpd-F

ACAGGTGGGCAGTGGAGTAA

 Cebpd-R

GTGGCACTGTCACCCATACA

 Ebf1-F

GCGAGAATCTCCTTCAAGACTTC

 Ebf1-R

ACCTACTTGCCTTTGTGGGTT

 Il6-F

TAGTCCTTCCTACCCCAATTTCC

 Il6-R

TTGGTCCTTAGCCACTCCTTC

 Avpr1a-F

TGGTGGCCGTGCTGGGTAATAG

 Avpr1a-R

GCGGAAGCGGTAGGTGATGTC

 Lpar1-F

ATTTCACAGCCCCAGTTCAC

 Lpar1-R

CACCAGCTTGCTCACTGTGT

 Adm-F

TATCAGAGCATCGCCACAGA

 Adm-R

TTAGCGCCCACTTATTCCAC

Cebpb 3C primers

 

 cebpb-promoter

ACTCCGAATCCTCCATCCTT

 cebpb-region-b

CCTGCCCTGTATCAAAGCAT

 cebpb-region-a

CTGCCCAAATCAGTGAGGTT

 cebpb-region-c

CCTCTGTGAGGTCTGGTCGT

 cebpb-promoter-R

GGTGGCTGCGTTAGACAGTA

 cebpb-region-a-R

GTTGTATCCCAAGCCAGCTC

 cebpb-region-b-R

CTCCCCACTCTGTTCAGGAC

 cebpb-region-c-R

TAACAGCAGGGATGGGTTCT