Skip to main content

Table 2 Thirty-three DMPs representing six DMRs associated with MS

From: Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

CpG ID Chr Pos (bp) DMR Gene Region F stat P value Control Case ∆beta
cg17178900 1 205,818,956 1 PM20D1 Body 6.54 0.014 0.470 0.646 0.176
cg26354017 1 205,819,088 1 PM20D1 1stExon 6.50 0.014 0.411 0.599 0.188
cg14159672 1 205,819,179 1 PM20D1 1stExon 6.09 0.017 0.444 0.616 0.173
cg14893161 1 205,819,251 1 PM20D1 5′UTR 7.42 0.009 0.328 0.498 0.169
cg11965913 1 205,819,406 1 PM20D1 TSS200 5.38 0.025 0.303 0.467 0.164
cg24503407 1 205,819,492 1 PM20D1 TSS1500 6.38 0.015 0.404 0.560 0.157
cg25644740 6 29,894,152 2 HCG4P6 TSS1500 5.93 0.019 0.448 0.612 0.164
cg04520169 6 29,894,195 2 HCG4P6 TSS1500 7.27 0.010 0.377 0.524 0.148
cg23237314 6 29,894,197 2 HCG4P6 TSS1500 6.97 0.011 0.374 0.492 0.117
cg08491487 6 30,039,130 3 RNF39 Body 10.02 0.003 0.078 0.181 0.103
cg00947782 6 30,039,142 3 RNF39 Body 12.34 0.001 0.102 0.210 0.108
cg03343571 6 30,039,175 3 RNF39 Body 13.64 0.001 0.212 0.334 0.122
cg13185413 6 30,039,202 3 RNF39 Body 11.78 0.001 0.206 0.326 0.119
cg09279736 6 30,039,403 3 RNF39 Body 14.19 0.000 0.287 0.404 0.117
cg07382347 6 30,039,408 3 RNF39 Body 13.22 0.001 0.153 0.295 0.142
cg13401893 6 30,039,432 3 RNF39 Body 19.38 0.000 0.350 0.508 0.158
cg12633154 6 30,039,435 3 RNF39 Body 18.69 0.000 0.310 0.477 0.167
cg10568066 6 30,039,442 3 RNF39 Body 22.29 0.000 0.372 0.560 0.188
cg16078649 6 30,039,466 3 RNF39 Body 13.37 0.001 0.346 0.451 0.105
cg10930308 6 30,039,476 3 RNF39 Body 12.69 0.001 0.193 0.317 0.125
cg01341801 6 32,489,203 4 DRB5 Body 4.419 0.041 0.249 0.455 0.205
cg26981746 6 32,490,012 4 DRB5 Body 4.645 0.036 0.501 0.633 0.132
cg12015991 6 32,490,043 4 DRB5 Body 5.591 0.022 0.649 0.778 0.128
cg08578320 6 32,552,039 5 DRB1 Body 6.558 0.014 0.754 0.588 −0.166
cg09139047 6 32,552,042 5 DRB1 Body 5.129 0.028 0.754 0.576 −0.179
cg15602423 6 32,552,095 5 DRB1 Body 8.966 0.004 0.659 0.387 −0.272
cg15982117 6 32,552,106 5 DRB1 Body 5.811 0.020 0.684 0.492 −0.192
cg14645244 6 32,552,205 5 DRB1 Body 6.068 0.017 0.521 0.318 −0.203
cg09949906 6 32,552,350 5 DRB1 Body 5.076 0.029 0.699 0.507 −0.192
cg10632894 6 32,552,453 5 DRB1 Body 4.536 0.038 0.825 0.681 −0.144
cg01053087 8 637,909 6 ERICH1 Body 10.55 0.002 0.330 0.164 −0.166
cg05875700 8 638,208 6 ERICH1 Body 8.864 0.005 0.319 0.120 −0.199
cg12641240 8 638,330 6 ERICH1 Body 6.055 0.018 0.194 0.069 −0.125
  1. DMP differentially methylated position, DMR differentially methylated region