From: Distinct DNA methylation profiles in subtypes of orofacial cleft
Chr | CpG | Regression coefficient | P value | Gene | Relation to CpG island | Relation to gene |
---|---|---|---|---|---|---|
19 | cg01634146 | 0.19 | 9.80 × 10−13 | NFIX | S_Shelf | Body |
22 | cg12899065 | 0.16 | 3.98 × 10−8 | GP1BB;SEPT5 | Island | TSS1500;3′UTR |
6 | cg14623715 | 0.14 | 2.46 × 10−10 | PDE7B |  | Body |
10 | cg02017450 | −0.14 | 5.93 × 10−11 | intergenic [SFTA1P] |  |  |
8 | cg04364695 | −0.13 | 4.27 × 10−8 | ZMAT4 |  | Body |
7 | cg22114489 | −0.13 | 4.60 × 10−8 | intergenic [CUX2] |  |  |
1 | cg12697139 | −0.13 | 2.23 × 10−11 | intergenic [MIR205HG] |  |  |
2 | cg19075787 | −0.13 | 8.44 × 10−9 | intergenic [LOC284998] |  |  |
11 | cg17696044 | −0.13 | 8.61 × 10−8 | SHANK2 |  | Body |
20 | cg19592472 | −0.12 | 5.04 × 10−8 | OXT | Island | 1stExon;5′UTR |
4 | cg14348967 | −0.12 | 5.12 × 10−9 | intergenic [DQ599898] |  |  |
6 | cg00257775 | −0.12 | 9.45 × 10−10 | ZFAND3 |  | Body |
3 | cg25938530 | −0.11 | 2.04 × 10−8 | ITIH1 |  | TSS200;Body |
11 | cg12155547 | −0.11 | 9.96 × 10−12 | intergenic [NEAT1] | S_Shelf |  |
1 | cg18147098 | 0.11 | 5.44 × 10−8 | intergenic [ATF3] | S_Shore |  |
8 | cg19496364 | 0.10 | 1.16 × 10−8 | intergenic [LINC00535] |  |  |
7 | cg27508620 | 0.10 | 3.67 × 10−8 | intergenic [SP4] |  |  |
6 | cg25426302 | 0.10 | 9.90 × 10−8 | PPT2;PRRT1 | N_Shore | TSS1500 |
10 | cg20327845 | −0.10 | 6.66 × 10−8 | PFKP |  | Body |
3 | cg05581878 | −0.10 | 2.50 × 10−9 | intergenic [AK097161] |  |  |
10 | cg19220719 | −0.10 | 7.02 × 10−9 | intergenic [C10orf11] |  |  |
22 | cg13251842 | 0.09 | 6.67 × 10−8 | MIRLET7A3;MIRLET7B |  | TSS200; TSS1500 |
19 | cg27392771 | 0.09 | 5.25 × 10−15 | NFIX | S_Shore | Body |
6 | cg23279756 | −0.09 | 7.14 × 10−8 | intergenic [ARMC2] |  |  |
2 | cg07644939 | 0.09 | 3.12 × 10−10 | SNED1 | S_Shore | Body |