From: DNA methylation signatures for 2016 WHO classification subtypes of diffuse gliomas
Training set (TCGA cohort) | Validation set (GSE58218 cohort) | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
No. | CpG ID | Gene name | Average β in mutant | Average β in WT | ∆β = (avg β in mutant−avg β in WT) | p value | FDR | Average β in mutant | Average β in WT | ∆β = (avg β in mutant−avg β in WT) | p value | FDR |
1 | cg00976453 | KCNB1 | 0.795 | 0.037 | 0.758 | 1.31E−27 | 1.67E−27 | 0.806 | 0.162 | 0.644 | 1.18E−19 | 1.38E−19 |
2 | cg02423318 | NA | 0.860 | 0.096 | 0.764 | 9.56E−28 | 1.67E−27 | 0.876 | 0.167 | 0.709 | 7.35E−21 | 2.87E−20 |
3 | cg03300177 | GNAO1 | 0.841 | 0.063 | 0.777 | 9.78E−28 | 1.67E−27 | 0.839 | 0.171 | 0.667 | 1.47E−20 | 2.95E−20 |
4 | cg05866411 | FGFRL1 | 0.784 | 0.102 | 0.682 | 8.35E−28 | 1.67E−27 | 0.681 | 0.208 | 0.473 | 3.96E−20 | 5.54E−20 |
5 | cg07355841 | TPPP3 | 0.835 | 0.055 | 0.781 | 1.25E−27 | 1.67E−27 | 0.819 | 0.184 | 0.635 | 1.93E−20 | 3.38E−20 |
6 | cg08231710 | MMP23A | 0.874 | 0.127 | 0.747 | 9.35E−28 | 1.67E−27 | 0.809 | 0.293 | 0.516 | 1.47E−18 | 1.58E−18 |
7 | cg08442798 | NA | 0.772 | 0.023 | 0.749 | 8.35E−28 | 1.67E−27 | 0.824 | 0.090 | 0.734 | 5.43E−21 | 2.87E−20 |
8 | cg10064339 | UCP2 | 0.779 | 0.042 | 0.737 | 8.35E−28 | 1.67E−27 | 0.805 | 0.115 | 0.690 | 8.82E−21 | 2.87E−20 |
9 | cg10504751 | GNAO1 | 0.846 | 0.067 | 0.779 | 1.23E−27 | 1.67E−27 | 0.846 | 0.173 | 0.673 | 2.61E−20 | 4.06E−20 |
10 | cg11302533 | NA | 0.784 | 0.037 | 0.747 | 1.8E−27 | 1.94E−27 | 0.834 | 0.102 | 0.732 | 1.19E−20 | 2.87E−20 |
11 | cg12565681 | RHBDF2 | 0.834 | 0.053 | 0.781 | 1.44E−27 | 1.68E−27 | 0.822 | 0.295 | 0.527 | 5.87E−18 | 5.87E−18 |
12 | cg20564913 | FGFRL1 | 0.837 | 0.108 | 0.729 | 8.94E−28 | 1.67E−27 | 0.832 | 0.222 | 0.610 | 1.23E−20 | 2.87E−20 |
13 | cg25499397 | GPR62 | 0.822 | 0.076 | 0.746 | 8.35E−28 | 1.67E−27 | 0.798 | 0.272 | 0.527 | 1.12E−19 | 1.38E−19 |
14 | cg25813864 | RAPGEFL1 | 0.851 | 0.064 | 0.787 | 2.64E−27 | 2.64E−27 | 0.855 | 0.160 | 0.695 | 9.37E−21 | 2.87E−20 |