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Table 3 Top five myeloid-specific loci

From: Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival

 

Chromosome

MAPINFO hg19 location

Strand

Annotated gene

Gene located on the same or opposite transcription strand

SNP 10 bases to hybridization

MAF

Genomic context

Infinium

Enhancer

cg25938803

chr2

43767347

+

THADA

Opposite

rs183844032a

0.0002

Body

II

 

Sequenceb

GCACTACAGCCAGTCACCAGCAATGACTGCAAGTAACTCTAGGACACTGACGCCTATTTGATTTGGAAGAGAATAAGGAACATAATGATGCCTGAAATGTC

cg00901982

chr2

70257298

PCBP1-AS1

Same

rs533928090

0.0002

Body

II

 

Sequenceb

GACATTTCAGGCATCATTATGTTCCTTATTCTCTTCCAAATCAAATAGGCGTCAGTGTCCTAGAGTTACTTGCAGTCATTGCTGGTGACTGGCTGTAGTGC

cg01591037

chr12

15134481

PDE6H

Opposite

rs144778897a

0.001597

3UTR

II

 

Sequenceb

GACATTTCAGGCATCATTATGTTCCTTATTCTCTTCCAAATCAAATAGGCGTCAGTGTCCTAGAGTTACTTGCAGTCATTGCTGGTGACTGGCTGTAGTGC

cg10456459

chr12

22843015

+

ETNK1

Same

rs373083641

0.0002

3UTR

II

True

Sequenceb

GCACTACAGCCAGTCACCAGCAATGACTGCAAGTAACTCTAGGACACTGACGCCTATTTGATTTGGAAGAGAATAAGGAACATAATGATGCCTGAAATGTC

cg03621504

chr12

116571240

+

MED13L

Opposite

N/A

N/A

Body

II

 

Sequenceb

GCACTACAGCCAGTCACCAGCAATGACTGCAAGTAACTCTAGGACACTGACGCCTATTTGATTTGGAAGAGAATAAGGAACATAATGATGCCTGAAATGTC

  1. MAF minor allele frequency
  2. aSNP on hybridization site
  3. bSequence corresponding to 50 bases upstream and 50 bases downstream of the CpG location based on the GRCh37/hg19 build