Fig. 1

Flowchart presenting our approach combining genome-wide association study (GWAS) and epigenome-wide association study (EWAS) hits to identify cis methylation quantitative trait loci (mQTLs) that could be associated with allergic rhinitis with (ARA) or without asthma (AR). We first performed GWAS and EWAS separately for AR and ARA. We then selected marginally associated SNPs (p < 0.05) where the three genotyping groups were observed at least five times. We also selected marginally associated CpGs (p < 0.05) that had a Δβ > 0.05 and that were located in the gene body or 1.5-kb from the transcription start site (TSS). We then linked the SNPs and CpGs that were 1 Mb apart by performing cis-mQTLs for both AR and ARA. We used Bonferroni p value cutoffs to assess significance