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Table 3 Differentially methylated regions between the DHA-supplemented and control group at birth

From: Effect of prenatal DHA supplementation on the infant epigenome: results from a randomized controlled trial

 

hg19 coordinates

No. of probes

Size (bp)

Gene

Genomic location

Min P valuea

Max beta diff (DHA-control)b

VMR overlap

1

chr3:138152837-138153763

12

926

ESYT3

TSS1500,TSS200,1stExon,5′UTR

5.75E−15

−0.045

Y

2

chr12:132293329-132293702

5

373

 

Intergenic

1.12E−07

−0.026

Y

3

chr15:34610829-34611069

4

240

SLC12A6

Body,1stExon,5′UTR,TSS200

4.99E−06

−0.011

Y

4

chr3:42306150-42307193

10

1043

CCK

5′UTR,1stExon,TSS200,TSS1500

6.05E−06

−0.012

Y

5

chr7:1882776-1883876

9

1100

MAD1L1

Body

8.75E−06

0.023

Y

6

chr2:48844728−48845068

8

340

GTF2A1L, STON1

TSS1500,Body,TSS200,1stExon,5′UTR

8.75E−06

−0.019

Y

7

chr6:166876490-166877038

7

548

RPS6KA2

Body

8.75E−06

0.022

Y

8

chr8:59058254-59058585

3

331

FAM110B

5′UTR

9.79E−06

−0.009

N

9

chr10:134221633-134222453

6

820

PWWP2B

3′UTR,Body

1.10E−05

−0.033

Y

10

chr3:42201314-42201898

6

584

TRAK1

TSS1500,Body,TSS200,1stExon

2.11E−05

−0.015

N

11

chr6:150346721-150347053

10

332

RAET1L

TSS200,TSS1500

5.41E−05

−0.009

Y

12

chr12:7781004-7781431

5

427

 

Intergenic

2.15E−04

−0.044

Y

13

chr6:1619162-1619687

3

525

 

Intergenic

2.62E−04

−0.012

N

14

chr8:117950244-117950504

7

260

C8orf85

TSS1500,TSS200,1stExon,5′UTR

4.08E−04

−0.01

N

15

chr4:62382932-62383240

4

308

LPHN3

Body

6.20E−04

−0.019

N

16

chr4:1107202-1107259

2

57

RNF212

1stExon,5′UTR

6.45E−04

−0.01

N

17

chr17:75446431-75446661

6

230

SEPT9

TSS200,Body,1stExon,5′UTR

7.94E−04

−0.013

N

18

chr6:31549929-31550090

2

161

LTB

Body,1stExon

8.92E−04

−0.008

N

19

chr22:32599511-32599516

2

5

RFPL2

TSS200,5′UTR,TSS1500

9.17E−04

−0.037

Y

20

chr20:13620031-13620048

2

17

TASP1

TSS1500

9.61E−04

0.012

N

21

chr1:156261200-156261207

2

7

TMEM79

Body

9.77E−04

0.01

N

  1. Abbreviations: DMR differentially methylated region, VMR variable methylated region, TSS1500 1500 base pairs from the transcription start site, TSS200 200 base pairs from the transcription start site, 5′UTR 5′ untranslated region, 3′UTR 3′ untranslated region
  2. aSmallest P value for a probe in the DMR
  3. bLargest DNA methylation (beta value) difference between the DHA and control group for a probe within the DMR